miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6938 5' -57 NC_001875.2 + 128016 0.66 0.883118
Target:  5'- cCGCGCCG-GCGUgcgC-CGACGaCGGc -3'
miRNA:   3'- cGCGCGGCgCGCAaa-GaGUUGC-GCCc -5'
6938 5' -57 NC_001875.2 + 17984 0.66 0.883118
Target:  5'- aCGUGCC-CGCGU---UCAACGUGcGGc -3'
miRNA:   3'- cGCGCGGcGCGCAaagAGUUGCGC-CC- -5'
6938 5' -57 NC_001875.2 + 18278 0.66 0.883118
Target:  5'- gGCGCGCCGUGCGcga--CcGCGCcguugauuGGGa -3'
miRNA:   3'- -CGCGCGGCGCGCaaagaGuUGCG--------CCC- -5'
6938 5' -57 NC_001875.2 + 128749 0.66 0.883118
Target:  5'- cCGCGCCccgGCGCGUgca-CGcCGUGGGc -3'
miRNA:   3'- cGCGCGG---CGCGCAaagaGUuGCGCCC- -5'
6938 5' -57 NC_001875.2 + 32136 0.66 0.883118
Target:  5'- -aGCGCCGCauaGCG---CUCAACgGCGGc -3'
miRNA:   3'- cgCGCGGCG---CGCaaaGAGUUG-CGCCc -5'
6938 5' -57 NC_001875.2 + 82393 0.66 0.883118
Target:  5'- gGCGCcguccaccgucaGCCGCGCGgUUUCguacaagugCAGCGCa-- -3'
miRNA:   3'- -CGCG------------CGGCGCGC-AAAGa--------GUUGCGccc -5'
6938 5' -57 NC_001875.2 + 2300 0.66 0.876119
Target:  5'- cGCGCcgugGCCGCGCGcagCUCGGCcagcuCGGc -3'
miRNA:   3'- -CGCG----CGGCGCGCaaaGAGUUGc----GCCc -5'
6938 5' -57 NC_001875.2 + 121443 0.66 0.876119
Target:  5'- cGgGUGCCGCGCca----CGGCGCGGcGg -3'
miRNA:   3'- -CgCGCGGCGCGcaaagaGUUGCGCC-C- -5'
6938 5' -57 NC_001875.2 + 80298 0.66 0.876119
Target:  5'- aGCGCGUCgGCGUGUUcgC-CAGCGCu-- -3'
miRNA:   3'- -CGCGCGG-CGCGCAAa-GaGUUGCGccc -5'
6938 5' -57 NC_001875.2 + 94473 0.66 0.876119
Target:  5'- uGCaGCGgCGCGCGcgUUCgCAcgagcGCGCGGc -3'
miRNA:   3'- -CG-CGCgGCGCGCa-AAGaGU-----UGCGCCc -5'
6938 5' -57 NC_001875.2 + 98923 0.66 0.876119
Target:  5'- cGCgGCGCCgguuGCGCGUgcg-CGACGCGc- -3'
miRNA:   3'- -CG-CGCGG----CGCGCAaagaGUUGCGCcc -5'
6938 5' -57 NC_001875.2 + 100194 0.66 0.876119
Target:  5'- aGCGCGCCGUuguGCGacaacuugCUCGugGcCGuGGu -3'
miRNA:   3'- -CGCGCGGCG---CGCaaa-----GAGUugC-GC-CC- -5'
6938 5' -57 NC_001875.2 + 39640 0.66 0.876119
Target:  5'- gGCGCGCagcgaaccgCGCGCGagUUUgggccggCGGCGCGcGGc -3'
miRNA:   3'- -CGCGCG---------GCGCGCa-AAGa------GUUGCGC-CC- -5'
6938 5' -57 NC_001875.2 + 98336 0.66 0.87326
Target:  5'- cCGCGCUGCGUGUacaaUCgguuggcgcacccCAGCGCGcGGc -3'
miRNA:   3'- cGCGCGGCGCGCAa---AGa------------GUUGCGC-CC- -5'
6938 5' -57 NC_001875.2 + 118104 0.66 0.871093
Target:  5'- cGCGaCGCCGCGCGagugguggagagcaUCAaaaGCGUGGa -3'
miRNA:   3'- -CGC-GCGGCGCGCaaag----------AGU---UGCGCCc -5'
6938 5' -57 NC_001875.2 + 36116 0.66 0.868908
Target:  5'- gGCgGCGCCGCucaugcacuucGCGUU--UCAGCGCGc- -3'
miRNA:   3'- -CG-CGCGGCG-----------CGCAAagAGUUGCGCcc -5'
6938 5' -57 NC_001875.2 + 47601 0.66 0.868908
Target:  5'- cGC-CGgCGCGCGUUUgccgCUCAACaGUGGc -3'
miRNA:   3'- -CGcGCgGCGCGCAAA----GAGUUG-CGCCc -5'
6938 5' -57 NC_001875.2 + 113853 0.66 0.868908
Target:  5'- uCGgGCCGCaCGUUg---AACGCGGGc -3'
miRNA:   3'- cGCgCGGCGcGCAAagagUUGCGCCC- -5'
6938 5' -57 NC_001875.2 + 38274 0.66 0.868175
Target:  5'- -aGCGCCucgcagcGCGCGUacgaCGACGCGGu -3'
miRNA:   3'- cgCGCGG-------CGCGCAaagaGUUGCGCCc -5'
6938 5' -57 NC_001875.2 + 52557 0.66 0.864481
Target:  5'- uGCGCGCaCGCGCGccacagacauugacaUcgUCUCcACGCGc- -3'
miRNA:   3'- -CGCGCG-GCGCGC---------------Aa-AGAGuUGCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.