miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6939 3' -52.4 NC_001875.2 + 108198 0.66 0.980772
Target:  5'- ---cUGGGCcUCGGcgagcACCCGCucaGCAAGa -3'
miRNA:   3'- cuuaACCCGcAGCU-----UGGGCG---UGUUCc -5'
6939 3' -52.4 NC_001875.2 + 111502 0.66 0.980772
Target:  5'- -----uGGUGuUCGAGCCCGguCAAGa -3'
miRNA:   3'- cuuaacCCGC-AGCUUGGGCguGUUCc -5'
6939 3' -52.4 NC_001875.2 + 119531 0.66 0.978505
Target:  5'- ----cGGGCG-CGuuGACCaCGCACAcGGc -3'
miRNA:   3'- cuuaaCCCGCaGC--UUGG-GCGUGUuCC- -5'
6939 3' -52.4 NC_001875.2 + 45444 0.66 0.976045
Target:  5'- --uUUGcGCGUCGAACUCgGCGCucGGc -3'
miRNA:   3'- cuuAACcCGCAGCUUGGG-CGUGuuCC- -5'
6939 3' -52.4 NC_001875.2 + 11776 0.66 0.976045
Target:  5'- -uGUUGGGCGUU-AGCCUGUuCAGGu -3'
miRNA:   3'- cuUAACCCGCAGcUUGGGCGuGUUCc -5'
6939 3' -52.4 NC_001875.2 + 67228 0.66 0.970519
Target:  5'- ---gUGGGCGcaaaCGGgugGCCCGacuGCGAGGg -3'
miRNA:   3'- cuuaACCCGCa---GCU---UGGGCg--UGUUCC- -5'
6939 3' -52.4 NC_001875.2 + 69240 0.66 0.970519
Target:  5'- ----gGcGGCGUCGAACggCGCGCuGGGc -3'
miRNA:   3'- cuuaaC-CCGCAGCUUGg-GCGUGuUCC- -5'
6939 3' -52.4 NC_001875.2 + 63136 0.66 0.970519
Target:  5'- ----cGGGCG-CGcGGCCgGCGCAcGGg -3'
miRNA:   3'- cuuaaCCCGCaGC-UUGGgCGUGUuCC- -5'
6939 3' -52.4 NC_001875.2 + 9521 0.66 0.967438
Target:  5'- ---aUGGGCG-CGGAagCCGCGCccgauAGGa -3'
miRNA:   3'- cuuaACCCGCaGCUUg-GGCGUGu----UCC- -5'
6939 3' -52.4 NC_001875.2 + 104751 0.66 0.967438
Target:  5'- gGGcgUGGGCGUCG-GCgCCGaCAaucucagauauCAAGGg -3'
miRNA:   3'- -CUuaACCCGCAGCuUG-GGC-GU-----------GUUCC- -5'
6939 3' -52.4 NC_001875.2 + 81843 0.67 0.964135
Target:  5'- ----cGGGCG-CGAccAUCCGCACGgucaacgacacGGGa -3'
miRNA:   3'- cuuaaCCCGCaGCU--UGGGCGUGU-----------UCC- -5'
6939 3' -52.4 NC_001875.2 + 97415 0.67 0.964135
Target:  5'- ---aUGGGCGU-GAAUuuGCGCAAc- -3'
miRNA:   3'- cuuaACCCGCAgCUUGggCGUGUUcc -5'
6939 3' -52.4 NC_001875.2 + 115530 0.67 0.964135
Target:  5'- -uGUU-GGUGUCGAACCCGUccACAAu- -3'
miRNA:   3'- cuUAAcCCGCAGCUUGGGCG--UGUUcc -5'
6939 3' -52.4 NC_001875.2 + 53565 0.67 0.952839
Target:  5'- ----cGGGC-UUGGugCCGUACAAGa -3'
miRNA:   3'- cuuaaCCCGcAGCUugGGCGUGUUCc -5'
6939 3' -52.4 NC_001875.2 + 48979 0.68 0.929137
Target:  5'- aGAGUcGGGCGcCGAACUgcccaaguCGCcCAAGGu -3'
miRNA:   3'- -CUUAaCCCGCaGCUUGG--------GCGuGUUCC- -5'
6939 3' -52.4 NC_001875.2 + 38778 0.68 0.929137
Target:  5'- -uGUUGGGCGgagagCGcGCCCGCAauucGGc -3'
miRNA:   3'- cuUAACCCGCa----GCuUGGGCGUguu-CC- -5'
6939 3' -52.4 NC_001875.2 + 40483 0.68 0.929137
Target:  5'- ----cGGGCGUC-AugUCGCGCAAcGGc -3'
miRNA:   3'- cuuaaCCCGCAGcUugGGCGUGUU-CC- -5'
6939 3' -52.4 NC_001875.2 + 51635 0.68 0.92308
Target:  5'- ----aGGGCGUU-AACCCGUACAcccuguuGGGc -3'
miRNA:   3'- cuuaaCCCGCAGcUUGGGCGUGU-------UCC- -5'
6939 3' -52.4 NC_001875.2 + 20992 0.68 0.921374
Target:  5'- --uUUGGGCGUCcuccagcuguuuGCCCGCAUAAa- -3'
miRNA:   3'- cuuAACCCGCAGcu----------UGGGCGUGUUcc -5'
6939 3' -52.4 NC_001875.2 + 50355 0.69 0.917896
Target:  5'- -cGUU-GGCGUCGGGCCgCGCGCGc-- -3'
miRNA:   3'- cuUAAcCCGCAGCUUGG-GCGUGUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.