miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6939 5' -58.4 NC_001875.2 + 10980 0.66 0.771946
Target:  5'- cUGCAGUcaagcgacgaaGCGCUGcaggcgCGCGUGCCCa-- -3'
miRNA:   3'- -AUGUCG-----------CGCGAUua----GCGCGCGGGcag -5'
6939 5' -58.4 NC_001875.2 + 18275 0.66 0.771946
Target:  5'- aAUGGCGCGCcgugCGCGacCGCgCCGUUg -3'
miRNA:   3'- aUGUCGCGCGauuaGCGC--GCG-GGCAG- -5'
6939 5' -58.4 NC_001875.2 + 14812 0.66 0.771946
Target:  5'- aGgAGCGCcaGCaUGGUCaGCGCGCCCu-- -3'
miRNA:   3'- aUgUCGCG--CG-AUUAG-CGCGCGGGcag -5'
6939 5' -58.4 NC_001875.2 + 37046 0.66 0.771946
Target:  5'- cACGGCGCGUgca-CGCGCGCggaCG-Cg -3'
miRNA:   3'- aUGUCGCGCGauuaGCGCGCGg--GCaG- -5'
6939 5' -58.4 NC_001875.2 + 39637 0.66 0.771946
Target:  5'- aAUGGCGCGCagcgAAcCGCGCGCgaGUUu -3'
miRNA:   3'- aUGUCGCGCGa---UUaGCGCGCGggCAG- -5'
6939 5' -58.4 NC_001875.2 + 36594 0.66 0.771946
Target:  5'- aUGCGGCGCaGCcgcugCGCGuCGCCCu-- -3'
miRNA:   3'- -AUGUCGCG-CGauua-GCGC-GCGGGcag -5'
6939 5' -58.4 NC_001875.2 + 99690 0.66 0.771946
Target:  5'- aGCAGCGCGUcu-UCGC-CG-CCGUUg -3'
miRNA:   3'- aUGUCGCGCGauuAGCGcGCgGGCAG- -5'
6939 5' -58.4 NC_001875.2 + 50494 0.66 0.771946
Target:  5'- cGCGuGCGCGCggcaccaGCGCGCCgCG-Cg -3'
miRNA:   3'- aUGU-CGCGCGauuag--CGCGCGG-GCaG- -5'
6939 5' -58.4 NC_001875.2 + 113641 0.66 0.762456
Target:  5'- gACGGCGcCGCguaaucaaAGUCGCGCaGCuCCGa- -3'
miRNA:   3'- aUGUCGC-GCGa-------UUAGCGCG-CG-GGCag -5'
6939 5' -58.4 NC_001875.2 + 14036 0.66 0.762456
Target:  5'- aGCuGgGCGCUGAa--UGCGCUCGUCa -3'
miRNA:   3'- aUGuCgCGCGAUUagcGCGCGGGCAG- -5'
6939 5' -58.4 NC_001875.2 + 70201 0.66 0.762456
Target:  5'- aGCGGCGUGU----CGCGgGCCaCGUUa -3'
miRNA:   3'- aUGUCGCGCGauuaGCGCgCGG-GCAG- -5'
6939 5' -58.4 NC_001875.2 + 62603 0.66 0.762456
Target:  5'- -cCAGCGCGCcguUCGaCGCcGCCgUGUCc -3'
miRNA:   3'- auGUCGCGCGauuAGC-GCG-CGG-GCAG- -5'
6939 5' -58.4 NC_001875.2 + 125983 0.66 0.762456
Target:  5'- gGCAaacGCGUGCUGGUgcacugcuaCGCGgGCgCGUCc -3'
miRNA:   3'- aUGU---CGCGCGAUUA---------GCGCgCGgGCAG- -5'
6939 5' -58.4 NC_001875.2 + 28618 0.66 0.762456
Target:  5'- gUugAGCGCaagGCcggcGUCaGCGUGCCCGUg -3'
miRNA:   3'- -AugUCGCG---CGau--UAG-CGCGCGGGCAg -5'
6939 5' -58.4 NC_001875.2 + 33034 0.66 0.762456
Target:  5'- cGCAGCGCgGCggg-CGcCGCGCCgCG-Cg -3'
miRNA:   3'- aUGUCGCG-CGauuaGC-GCGCGG-GCaG- -5'
6939 5' -58.4 NC_001875.2 + 16757 0.66 0.762456
Target:  5'- gACAGCccgGCGUcgUGAcUGCGCGCCgCGUa -3'
miRNA:   3'- aUGUCG---CGCG--AUUaGCGCGCGG-GCAg -5'
6939 5' -58.4 NC_001875.2 + 30946 0.66 0.762456
Target:  5'- ---cGCGCGCUG--CG-GCGCCCGg- -3'
miRNA:   3'- auguCGCGCGAUuaGCgCGCGGGCag -5'
6939 5' -58.4 NC_001875.2 + 124881 0.66 0.762456
Target:  5'- aGCAGCGCGCcguggcgauGUCGCgGCGCaCG-Ca -3'
miRNA:   3'- aUGUCGCGCGau-------UAGCG-CGCGgGCaG- -5'
6939 5' -58.4 NC_001875.2 + 14719 0.66 0.7615
Target:  5'- aACAGUGUGUUGGUgauauucCGCGC-CCUGUUg -3'
miRNA:   3'- aUGUCGCGCGAUUA-------GCGCGcGGGCAG- -5'
6939 5' -58.4 NC_001875.2 + 91741 0.66 0.7615
Target:  5'- gUACAGCGCcaGCcAGUgGCGCGUcagcgccgcggccUCGUCg -3'
miRNA:   3'- -AUGUCGCG--CGaUUAgCGCGCG-------------GGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.