miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6941 3' -52.3 NC_001875.2 + 34908 0.66 0.965112
Target:  5'- aUUGugGCCGCCgCGgu---CGCCAACa -3'
miRNA:   3'- -AGUugUGGCGGaGCaagauGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 107769 0.66 0.965112
Target:  5'- cUCAACGCCGCCgcccaaaCGaaCcagACGCCggUa -3'
miRNA:   3'- -AGUUGUGGCGGa------GCaaGa--UGCGGuuG- -5'
6941 3' -52.3 NC_001875.2 + 130804 0.66 0.965112
Target:  5'- cCAACGCugugCGCCUCGggCccCGCCAcGCg -3'
miRNA:   3'- aGUUGUG----GCGGAGCaaGauGCGGU-UG- -5'
6941 3' -52.3 NC_001875.2 + 23763 0.66 0.965112
Target:  5'- ---cCGCCGCCUCGU---ACGCUAu- -3'
miRNA:   3'- aguuGUGGCGGAGCAagaUGCGGUug -5'
6941 3' -52.3 NC_001875.2 + 100123 0.66 0.965112
Target:  5'- cCAACuuCGCCgaaaGUaaUGCGCCGGCg -3'
miRNA:   3'- aGUUGugGCGGag--CAagAUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 110184 0.66 0.965112
Target:  5'- --cGCACUGCgCUCG-UCcGCGCUGGCg -3'
miRNA:   3'- aguUGUGGCG-GAGCaAGaUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 116886 0.66 0.965112
Target:  5'- aCGGCACaaacuCUUCG-UCUGCGCUAGCc -3'
miRNA:   3'- aGUUGUGgc---GGAGCaAGAUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 89253 0.66 0.965112
Target:  5'- cCAGCGCCgaGCUgacgCGcgCgUGCGCCGACc -3'
miRNA:   3'- aGUUGUGG--CGGa---GCaaG-AUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 26969 0.67 0.961619
Target:  5'- aCAAgGCCGuUCUCGaUUUGCGCuCGGCc -3'
miRNA:   3'- aGUUgUGGC-GGAGCaAGAUGCG-GUUG- -5'
6941 3' -52.3 NC_001875.2 + 77649 0.67 0.961619
Target:  5'- cUggUGCCGaacCCgggcgacgCGUUUUGCGCCAGCg -3'
miRNA:   3'- aGuuGUGGC---GGa-------GCAAGAUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 43555 0.67 0.961619
Target:  5'- aCAAuCACCGCgUCGcc---CGCCAGCg -3'
miRNA:   3'- aGUU-GUGGCGgAGCaagauGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 79379 0.67 0.961619
Target:  5'- aUUAGCugCGUCa-GUUCgggguCGCCGACa -3'
miRNA:   3'- -AGUUGugGCGGagCAAGau---GCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 3813 0.67 0.961619
Target:  5'- gUCGAcCACCgGCCgUCG-UCggcgcACGCCGGCg -3'
miRNA:   3'- -AGUU-GUGG-CGG-AGCaAGa----UGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 39077 0.67 0.957891
Target:  5'- uUguGCGCCGCggcgUCGUgCUGUGCCAACg -3'
miRNA:   3'- -AguUGUGGCGg---AGCAaGAUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 53772 0.67 0.957891
Target:  5'- --uGCACC-CCUCGUUC-ACGCaguaCAACg -3'
miRNA:   3'- aguUGUGGcGGAGCAAGaUGCG----GUUG- -5'
6941 3' -52.3 NC_001875.2 + 4011 0.67 0.953922
Target:  5'- cCAACGCCGCgCcCGUcugaCUGCuCCAGCg -3'
miRNA:   3'- aGUUGUGGCG-GaGCAa---GAUGcGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 113995 0.67 0.953922
Target:  5'- cCGACugCaCCUCGUUUUcgGCGCCcucGCg -3'
miRNA:   3'- aGUUGugGcGGAGCAAGA--UGCGGu--UG- -5'
6941 3' -52.3 NC_001875.2 + 101731 0.67 0.953922
Target:  5'- cUCAGCACCGUCacggCGUaCagcGCGCaCAGCa -3'
miRNA:   3'- -AGUUGUGGCGGa---GCAaGa--UGCG-GUUG- -5'
6941 3' -52.3 NC_001875.2 + 49864 0.67 0.953922
Target:  5'- cCGGCG-CGCCUUGccg-GCGCCAACc -3'
miRNA:   3'- aGUUGUgGCGGAGCaagaUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 44303 0.67 0.949709
Target:  5'- -gAGCGCUuCCUCaaUCUGgGCCAACg -3'
miRNA:   3'- agUUGUGGcGGAGcaAGAUgCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.