miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6941 5' -53.9 NC_001875.2 + 41283 0.66 0.95529
Target:  5'- cGGACGcccuucGCGcguaccgcaucaacaUGGACGAGGUGGUGUa- -3'
miRNA:   3'- aCUUGC------CGC---------------ACUUGCUCCACUACGgc -5'
6941 5' -53.9 NC_001875.2 + 79809 0.66 0.953696
Target:  5'- cGGGCcGCuUGAACGugcccggcauGGUGGUGCCa -3'
miRNA:   3'- aCUUGcCGcACUUGCu---------CCACUACGGc -5'
6941 5' -53.9 NC_001875.2 + 116873 0.66 0.953696
Target:  5'- gGAGCGGCGUuguggugcagGAguAUGAGGUGcacgacGCCa -3'
miRNA:   3'- aCUUGCCGCA----------CU--UGCUCCACua----CGGc -5'
6941 5' -53.9 NC_001875.2 + 106641 0.66 0.953696
Target:  5'- -aAACGGUGUcGACGGcGGUGuacaugucaAUGCCGg -3'
miRNA:   3'- acUUGCCGCAcUUGCU-CCAC---------UACGGC- -5'
6941 5' -53.9 NC_001875.2 + 10478 0.66 0.949547
Target:  5'- gUGAAUGGCGcuugcUGAACGAGuucGAgcUGCUGg -3'
miRNA:   3'- -ACUUGCCGC-----ACUUGCUCca-CU--ACGGC- -5'
6941 5' -53.9 NC_001875.2 + 3220 0.66 0.945157
Target:  5'- uUGGAUGGCGUGGGCGcguuGGcGuUGuuGg -3'
miRNA:   3'- -ACUUGCCGCACUUGCu---CCaCuACggC- -5'
6941 5' -53.9 NC_001875.2 + 84338 0.66 0.940524
Target:  5'- gGAGCGGCGaguggcgGAGCGgcugcgccgguAGGUGcgcggccUGCCGg -3'
miRNA:   3'- aCUUGCCGCa------CUUGC-----------UCCACu------ACGGC- -5'
6941 5' -53.9 NC_001875.2 + 116768 0.66 0.935646
Target:  5'- -aGGCGcugcGCGUGcAAUGAGuUGAUGCCGg -3'
miRNA:   3'- acUUGC----CGCAC-UUGCUCcACUACGGC- -5'
6941 5' -53.9 NC_001875.2 + 89801 0.67 0.93052
Target:  5'- cGAACGcaGCGcGGGCGGcagaucGUGGUGCCGg -3'
miRNA:   3'- aCUUGC--CGCaCUUGCUc-----CACUACGGC- -5'
6941 5' -53.9 NC_001875.2 + 75518 0.67 0.93052
Target:  5'- -cGAUGGCGUcGGCGuuGGUGAUGgCGu -3'
miRNA:   3'- acUUGCCGCAcUUGCu-CCACUACgGC- -5'
6941 5' -53.9 NC_001875.2 + 75476 0.67 0.93052
Target:  5'- -cGAUGGCGUcGGCGuuGGUGAUGgCGu -3'
miRNA:   3'- acUUGCCGCAcUUGCu-CCACUACgGC- -5'
6941 5' -53.9 NC_001875.2 + 75446 0.67 0.93052
Target:  5'- -cGAUGGCGUcGGCGuuGGUGAUGgCGu -3'
miRNA:   3'- acUUGCCGCAcUUGCu-CCACUACgGC- -5'
6941 5' -53.9 NC_001875.2 + 75398 0.67 0.93052
Target:  5'- -cGAUGGCGUcGGCGuuGGUGAUGgCGu -3'
miRNA:   3'- acUUGCCGCAcUUGCu-CCACUACgGC- -5'
6941 5' -53.9 NC_001875.2 + 75356 0.67 0.93052
Target:  5'- -cGAUGGCGUcGGCGuuGGUGAUGgCGu -3'
miRNA:   3'- acUUGCCGCAcUUGCu-CCACUACgGC- -5'
6941 5' -53.9 NC_001875.2 + 75296 0.67 0.93052
Target:  5'- -cGAUGGCGUcGGCGuuGGUGAUGgCGu -3'
miRNA:   3'- acUUGCCGCAcUUGCu-CCACUACgGC- -5'
6941 5' -53.9 NC_001875.2 + 66111 0.67 0.925147
Target:  5'- cGcGCGGCGggcGGCGAGGcGgcGCCGc -3'
miRNA:   3'- aCuUGCCGCac-UUGCUCCaCuaCGGC- -5'
6941 5' -53.9 NC_001875.2 + 127592 0.67 0.925147
Target:  5'- aUGGACGccaaguGUGUGggUGAGGUGAcccauuUGuuGa -3'
miRNA:   3'- -ACUUGC------CGCACuuGCUCCACU------ACggC- -5'
6941 5' -53.9 NC_001875.2 + 50016 0.67 0.919526
Target:  5'- gGGGCGcGCGUGGucgccgggcgGCGAGGcg--GCCGg -3'
miRNA:   3'- aCUUGC-CGCACU----------UGCUCCacuaCGGC- -5'
6941 5' -53.9 NC_001875.2 + 63690 0.67 0.913658
Target:  5'- aUGAGgGGCGcGcACGAGGUGcgcgugauUGCCu -3'
miRNA:   3'- -ACUUgCCGCaCuUGCUCCACu-------ACGGc -5'
6941 5' -53.9 NC_001875.2 + 101999 0.68 0.901185
Target:  5'- --uGCGGCGUGcgcGGCGGcGGUGGacugcagcgUGCCGu -3'
miRNA:   3'- acuUGCCGCAC---UUGCU-CCACU---------ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.