miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6942 3' -56.8 NC_001875.2 + 26416 0.66 0.828996
Target:  5'- --cGCCGGCaugcaaucGAGCAUGCcGuGUGUCGc -3'
miRNA:   3'- aauCGGUCGa-------CUCGUGCGuC-CACAGC- -5'
6942 3' -56.8 NC_001875.2 + 88275 0.66 0.820292
Target:  5'- --cGCCAGCaUGAcGCugGCGGGcgacgcggugauUGUCc -3'
miRNA:   3'- aauCGGUCG-ACU-CGugCGUCC------------ACAGc -5'
6942 3' -56.8 NC_001875.2 + 5916 0.66 0.819412
Target:  5'- --cGCCGGCauggcguUGGGUagcgccGCGCAGGUGggcgCGg -3'
miRNA:   3'- aauCGGUCG-------ACUCG------UGCGUCCACa---GC- -5'
6942 3' -56.8 NC_001875.2 + 24411 0.66 0.811408
Target:  5'- -aAGCUGGCgucggGGGCguaacugaacGCGCGGGcGUCGa -3'
miRNA:   3'- aaUCGGUCGa----CUCG----------UGCGUCCaCAGC- -5'
6942 3' -56.8 NC_001875.2 + 66748 0.66 0.793137
Target:  5'- cUUGGCCGccucGUUGAGCGCGUccuugcccAGcGUGUUGg -3'
miRNA:   3'- -AAUCGGU----CGACUCGUGCG--------UC-CACAGC- -5'
6942 3' -56.8 NC_001875.2 + 97874 0.66 0.783768
Target:  5'- -cGGUCGGCUGcgcgccgcacgGGCACGUugcGGGcGUCGg -3'
miRNA:   3'- aaUCGGUCGAC-----------UCGUGCG---UCCaCAGC- -5'
6942 3' -56.8 NC_001875.2 + 93863 0.66 0.783768
Target:  5'- --uGUCGgcGCUGAGCGCGCAGGccGcCGc -3'
miRNA:   3'- aauCGGU--CGACUCGUGCGUCCa-CaGC- -5'
6942 3' -56.8 NC_001875.2 + 53442 0.67 0.734973
Target:  5'- -cGGCCAGCgcgUGcAGCACuGCGGGUcGcUCGg -3'
miRNA:   3'- aaUCGGUCG---AC-UCGUG-CGUCCA-C-AGC- -5'
6942 3' -56.8 NC_001875.2 + 60578 0.67 0.734973
Target:  5'- aUGGCCAGCUuuuGCAcCGCGuuuGUGUCGu -3'
miRNA:   3'- aAUCGGUCGAcu-CGU-GCGUc--CACAGC- -5'
6942 3' -56.8 NC_001875.2 + 33098 0.67 0.734973
Target:  5'- --cGCCgucgcGGCUGAGCACGCAccacgacccGGUGaacgucUCGg -3'
miRNA:   3'- aauCGG-----UCGACUCGUGCGU---------CCAC------AGC- -5'
6942 3' -56.8 NC_001875.2 + 118321 0.68 0.714728
Target:  5'- -cGGCCGGCcGcGCGCuGCAGGUGa-- -3'
miRNA:   3'- aaUCGGUCGaCuCGUG-CGUCCACagc -5'
6942 3' -56.8 NC_001875.2 + 61737 0.68 0.70449
Target:  5'- -cGGCCGGCUGcGGCGCaaAGGgGUCa -3'
miRNA:   3'- aaUCGGUCGAC-UCGUGcgUCCaCAGc -5'
6942 3' -56.8 NC_001875.2 + 131752 0.68 0.694188
Target:  5'- -gGGCCGGCggcggaucGGGCgGCGCGucauuGGUGUCGu -3'
miRNA:   3'- aaUCGGUCGa-------CUCG-UGCGU-----CCACAGC- -5'
6942 3' -56.8 NC_001875.2 + 36405 0.68 0.679675
Target:  5'- --uGCCAGCcGcGCACGCuggccggcgccgcGGUGUCGg -3'
miRNA:   3'- aauCGGUCGaCuCGUGCGu------------CCACAGC- -5'
6942 3' -56.8 NC_001875.2 + 89285 0.68 0.673429
Target:  5'- cUGGCgCGGCUGGGCGCGaccaccguGGagaUGUCGa -3'
miRNA:   3'- aAUCG-GUCGACUCGUGCgu------CC---ACAGC- -5'
6942 3' -56.8 NC_001875.2 + 52367 0.69 0.662992
Target:  5'- --cGCCAGCguccaaGAGCGCaaguGCAGGUG-CGu -3'
miRNA:   3'- aauCGGUCGa-----CUCGUG----CGUCCACaGC- -5'
6942 3' -56.8 NC_001875.2 + 43840 0.69 0.652528
Target:  5'- gUUGGCUGGCUuGGCugcuGCGCGGGcGUCGc -3'
miRNA:   3'- -AAUCGGUCGAcUCG----UGCGUCCaCAGC- -5'
6942 3' -56.8 NC_001875.2 + 108245 0.69 0.642048
Target:  5'- -cGGCCGGCUGGGC-UGCggcaucauugGGGUGUgCGc -3'
miRNA:   3'- aaUCGGUCGACUCGuGCG----------UCCACA-GC- -5'
6942 3' -56.8 NC_001875.2 + 63083 0.69 0.621072
Target:  5'- -aGGCUGGUUGuGCAC-CAGcGUGUCGa -3'
miRNA:   3'- aaUCGGUCGACuCGUGcGUC-CACAGC- -5'
6942 3' -56.8 NC_001875.2 + 115917 0.69 0.621072
Target:  5'- --cGCCAGCUGGGuCAUGUugccGGUGcCGg -3'
miRNA:   3'- aauCGGUCGACUC-GUGCGu---CCACaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.