miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6942 5' -55.6 NC_001875.2 + 19762 0.66 0.905396
Target:  5'- gGUCAaaaACGuguCUGCG-CACCuGCUGGAAg -3'
miRNA:   3'- -CAGU---UGCu--GGCGCuGUGGcUGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 36305 0.66 0.905396
Target:  5'- cUCAGCGAUCgaauGCGAUcCCGcGCUGGGg -3'
miRNA:   3'- cAGUUGCUGG----CGCUGuGGC-UGACCUu -5'
6942 5' -55.6 NC_001875.2 + 21689 0.66 0.905396
Target:  5'- -cCGACGAgCGCGACGCgGuGCUGcGGu -3'
miRNA:   3'- caGUUGCUgGCGCUGUGgC-UGAC-CUu -5'
6942 5' -55.6 NC_001875.2 + 41005 0.66 0.898974
Target:  5'- cGUCAACGGCCGCGugGUCGuGCUc--- -3'
miRNA:   3'- -CAGUUGCUGGCGCugUGGC-UGAccuu -5'
6942 5' -55.6 NC_001875.2 + 118584 0.66 0.892312
Target:  5'- aUUGugGACCGCGGCGCCGcCg---- -3'
miRNA:   3'- cAGUugCUGGCGCUGUGGCuGaccuu -5'
6942 5' -55.6 NC_001875.2 + 73661 0.66 0.892312
Target:  5'- -gCGGCGGCUGCGGCugCuGCUGcGGc -3'
miRNA:   3'- caGUUGCUGGCGCUGugGcUGAC-CUu -5'
6942 5' -55.6 NC_001875.2 + 128034 0.66 0.885416
Target:  5'- -aCGACGGCCGgugguCGACGCUGAgucgggcccaaCUGGAc -3'
miRNA:   3'- caGUUGCUGGC-----GCUGUGGCU-----------GACCUu -5'
6942 5' -55.6 NC_001875.2 + 102000 0.66 0.878288
Target:  5'- -gCGGCGugCGCGGCGgCGG-UGGAc -3'
miRNA:   3'- caGUUGCugGCGCUGUgGCUgACCUu -5'
6942 5' -55.6 NC_001875.2 + 130661 0.66 0.870935
Target:  5'- uUCAGCGuggcaaaguGCCGCGACGacgccuCUGGCUGGu- -3'
miRNA:   3'- cAGUUGC---------UGGCGCUGU------GGCUGACCuu -5'
6942 5' -55.6 NC_001875.2 + 17626 0.66 0.870935
Target:  5'- aGUUGcUGGCCG-GACACgGACUGGGc -3'
miRNA:   3'- -CAGUuGCUGGCgCUGUGgCUGACCUu -5'
6942 5' -55.6 NC_001875.2 + 95424 0.66 0.870187
Target:  5'- -cCGAC-ACCGCGGCGCCGgccagcgugcgcgGCUGGc- -3'
miRNA:   3'- caGUUGcUGGCGCUGUGGC-------------UGACCuu -5'
6942 5' -55.6 NC_001875.2 + 48857 0.67 0.86336
Target:  5'- -cCGGCGACgaGCGGCGCCG-CgaGGAAa -3'
miRNA:   3'- caGUUGCUGg-CGCUGUGGCuGa-CCUU- -5'
6942 5' -55.6 NC_001875.2 + 118816 0.67 0.86336
Target:  5'- cGUguGCGACCGCGcCACUGuagacauuUUGGAGu -3'
miRNA:   3'- -CAguUGCUGGCGCuGUGGCu-------GACCUU- -5'
6942 5' -55.6 NC_001875.2 + 102585 0.67 0.839374
Target:  5'- gGUCGGCGGCCGCG-CACCcGCaguaugccacGGAAg -3'
miRNA:   3'- -CAGUUGCUGGCGCuGUGGcUGa---------CCUU- -5'
6942 5' -55.6 NC_001875.2 + 31126 0.67 0.839374
Target:  5'- uGUCGGCGuuUgGUGACAaaaUCGACUGGAAc -3'
miRNA:   3'- -CAGUUGCu-GgCGCUGU---GGCUGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 25379 0.67 0.8224
Target:  5'- cGUCAACGuugGCC-CGGCGCCGAUUGc-- -3'
miRNA:   3'- -CAGUUGC---UGGcGCUGUGGCUGACcuu -5'
6942 5' -55.6 NC_001875.2 + 71901 0.67 0.8224
Target:  5'- cGUCGACcaGCCGCGACACgGcACUGa-- -3'
miRNA:   3'- -CAGUUGc-UGGCGCUGUGgC-UGACcuu -5'
6942 5' -55.6 NC_001875.2 + 32150 0.68 0.813641
Target:  5'- cUCAACGGCgGCGaagacGCGCUGcucaACUGGAAc -3'
miRNA:   3'- cAGUUGCUGgCGC-----UGUGGC----UGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 40081 0.68 0.804712
Target:  5'- -aCGACGagGCCGCGGCGCUGACg---- -3'
miRNA:   3'- caGUUGC--UGGCGCUGUGGCUGaccuu -5'
6942 5' -55.6 NC_001875.2 + 111872 0.68 0.795623
Target:  5'- cGUCAGCaACgGCGagGCGCCGGCcGGAc -3'
miRNA:   3'- -CAGUUGcUGgCGC--UGUGGCUGaCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.