miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6942 5' -55.6 NC_001875.2 + 52038 1.06 0.004202
Target:  5'- cGUCAACGACCGCGACACCGACUGGAAc -3'
miRNA:   3'- -CAGUUGCUGGCGCUGUGGCUGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 131507 0.73 0.493561
Target:  5'- aGUCuGCGGCgCGCGguGCAgCGGCUGGAAg -3'
miRNA:   3'- -CAGuUGCUG-GCGC--UGUgGCUGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 90026 0.73 0.511219
Target:  5'- -gCAACuGGCCGCGGCGCCGGCgcgcgugccggcGGAAa -3'
miRNA:   3'- caGUUG-CUGGCGCUGUGGCUGa-----------CCUU- -5'
6942 5' -55.6 NC_001875.2 + 29431 0.73 0.533147
Target:  5'- -aCGGCGAgCGCGACGCCGACa---- -3'
miRNA:   3'- caGUUGCUgGCGCUGUGGCUGaccuu -5'
6942 5' -55.6 NC_001875.2 + 65465 0.72 0.553367
Target:  5'- gGUCGAacacgugcuCGaACCuCGACGCCGACUGGAu -3'
miRNA:   3'- -CAGUU---------GC-UGGcGCUGUGGCUGACCUu -5'
6942 5' -55.6 NC_001875.2 + 55113 0.72 0.573809
Target:  5'- cGUCGGCGuCCGCGuCACCGACg---- -3'
miRNA:   3'- -CAGUUGCuGGCGCuGUGGCUGaccuu -5'
6942 5' -55.6 NC_001875.2 + 7551 0.71 0.635927
Target:  5'- -gCAACGACC-UGACGCCGGC-GGAc -3'
miRNA:   3'- caGUUGCUGGcGCUGUGGCUGaCCUu -5'
6942 5' -55.6 NC_001875.2 + 80733 0.71 0.656694
Target:  5'- -aCGGCGugCaCGACGCgCGACUGGGc -3'
miRNA:   3'- caGUUGCugGcGCUGUG-GCUGACCUu -5'
6942 5' -55.6 NC_001875.2 + 49958 0.71 0.656694
Target:  5'- -cCGACGACCGUGcACGCCG--UGGAGu -3'
miRNA:   3'- caGUUGCUGGCGC-UGUGGCugACCUU- -5'
6942 5' -55.6 NC_001875.2 + 82203 0.7 0.677379
Target:  5'- -cCGGCGGCCGCucguguCGCCG-CUGGAAg -3'
miRNA:   3'- caGUUGCUGGCGcu----GUGGCuGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 110425 0.7 0.677379
Target:  5'- uUCAACuACCGCGACACC-ACggUGGAc -3'
miRNA:   3'- cAGUUGcUGGCGCUGUGGcUG--ACCUu -5'
6942 5' -55.6 NC_001875.2 + 28952 0.7 0.687669
Target:  5'- cGUguACGGCCGCGGCuuuCCGG-UGGAc -3'
miRNA:   3'- -CAguUGCUGGCGCUGu--GGCUgACCUu -5'
6942 5' -55.6 NC_001875.2 + 18285 0.7 0.687669
Target:  5'- cGUgcGCGACCGCGcCGuuGAUUGGGAu -3'
miRNA:   3'- -CAguUGCUGGCGCuGUggCUGACCUU- -5'
6942 5' -55.6 NC_001875.2 + 48521 0.7 0.697911
Target:  5'- cGUCAA-GACCGCguuuaaGACGCCGguGCUGGGc -3'
miRNA:   3'- -CAGUUgCUGGCG------CUGUGGC--UGACCUu -5'
6942 5' -55.6 NC_001875.2 + 5752 0.7 0.708096
Target:  5'- uUCGGCGGCCaGCGACAgUGACacGGAc -3'
miRNA:   3'- cAGUUGCUGG-CGCUGUgGCUGa-CCUu -5'
6942 5' -55.6 NC_001875.2 + 104783 0.7 0.708096
Target:  5'- aUCAAgGGCCGCGAuCGCCGGCg---- -3'
miRNA:   3'- cAGUUgCUGGCGCU-GUGGCUGaccuu -5'
6942 5' -55.6 NC_001875.2 + 49517 0.7 0.708096
Target:  5'- cUCGGCgGACCGCGACcagucGCUGguGCUGGAc -3'
miRNA:   3'- cAGUUG-CUGGCGCUG-----UGGC--UGACCUu -5'
6942 5' -55.6 NC_001875.2 + 72734 0.7 0.708096
Target:  5'- -gCGuCGGCCaGCGACGCCGucagcCUGGAAa -3'
miRNA:   3'- caGUuGCUGG-CGCUGUGGCu----GACCUU- -5'
6942 5' -55.6 NC_001875.2 + 114942 0.69 0.718215
Target:  5'- aUCAGCGACauCGCGGCGCCG-CUGc-- -3'
miRNA:   3'- cAGUUGCUG--GCGCUGUGGCuGACcuu -5'
6942 5' -55.6 NC_001875.2 + 69194 0.69 0.718215
Target:  5'- aUC-GCGugCGCGGCGCCGAC-GGc- -3'
miRNA:   3'- cAGuUGCugGCGCUGUGGCUGaCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.