miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6943 3' -51.6 NC_001875.2 + 67703 0.67 0.956539
Target:  5'- cAugGCCGGCgGCCUGaggggGUUCGuugccgAGCu -3'
miRNA:   3'- uUugCGGUCGaUGGACga---CAAGU------UCG- -5'
6943 3' -51.6 NC_001875.2 + 65701 0.67 0.956539
Target:  5'- -cACGCCGGCcgACCa-CUGUUCcgcGGGCg -3'
miRNA:   3'- uuUGCGGUCGa-UGGacGACAAG---UUCG- -5'
6943 3' -51.6 NC_001875.2 + 73705 0.67 0.947961
Target:  5'- -uGCGgCGGCUGCg-GCUGUUgGGGUu -3'
miRNA:   3'- uuUGCgGUCGAUGgaCGACAAgUUCG- -5'
6943 3' -51.6 NC_001875.2 + 103934 0.67 0.947961
Target:  5'- uAAACGCgGGCUgcgacggcgGCCUGUUGcacacggcaUUCGAGUc -3'
miRNA:   3'- -UUUGCGgUCGA---------UGGACGAC---------AAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 35251 0.67 0.943279
Target:  5'- aAAGCGCgC-GCUGCUgaaUGCcgcGUUCAAGCa -3'
miRNA:   3'- -UUUGCG-GuCGAUGG---ACGa--CAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 75749 0.68 0.938331
Target:  5'- uAAACGUgCAGCUguuGCUgcaGCUGcUCAAGCa -3'
miRNA:   3'- -UUUGCG-GUCGA---UGGa--CGACaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 1824 0.68 0.938331
Target:  5'- -uGCGUCAGCaacgacCCUGCUuUUCGGGUg -3'
miRNA:   3'- uuUGCGGUCGau----GGACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 43742 0.68 0.938331
Target:  5'- cGGGCGUUGGCUggcuuGgCUGCUGcgCGGGCg -3'
miRNA:   3'- -UUUGCGGUCGA-----UgGACGACaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 43796 0.68 0.938331
Target:  5'- cGGGCGUUGGCUggcuuGgCUGCUGcgCGGGCg -3'
miRNA:   3'- -UUUGCGGUCGA-----UgGACGACaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 43835 0.68 0.938331
Target:  5'- cGGGCGUUGGCUggcuuGgCUGCUGcgCGGGCg -3'
miRNA:   3'- -UUUGCGGUCGA-----UgGACGACaaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 114742 0.68 0.933115
Target:  5'- -uGCGUCAGCgacgACCgUGCUuUUCGGGUc -3'
miRNA:   3'- uuUGCGGUCGa---UGG-ACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 66155 0.68 0.927629
Target:  5'- ---gGCCGGCgugAUCgUGCUGaUCGGGCu -3'
miRNA:   3'- uuugCGGUCGa--UGG-ACGACaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 47702 0.68 0.915846
Target:  5'- cAACGCgGGgcaagugcacgaCUGCCUGCUGcUUGAGCc -3'
miRNA:   3'- uUUGCGgUC------------GAUGGACGACaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 4534 0.68 0.915846
Target:  5'- --cCGCCGGCUGcgguuCCUGCgGUUUggGg -3'
miRNA:   3'- uuuGCGGUCGAU-----GGACGaCAAGuuCg -5'
6943 3' -51.6 NC_001875.2 + 70863 0.68 0.915846
Target:  5'- -uGCGCCAGCgccgACCcGCU-UUCGAGa -3'
miRNA:   3'- uuUGCGGUCGa---UGGaCGAcAAGUUCg -5'
6943 3' -51.6 NC_001875.2 + 98041 0.68 0.915846
Target:  5'- cGAACGCguGUUcgGCaUGCUGaUCGAGCg -3'
miRNA:   3'- -UUUGCGguCGA--UGgACGACaAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 82269 0.68 0.909551
Target:  5'- cGGCGCgCAGCUGCUUGgccacuacaauuCUGgcgUCGGGCc -3'
miRNA:   3'- uUUGCG-GUCGAUGGAC------------GACa--AGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 60757 0.68 0.909551
Target:  5'- cAGCGaCAGCUGCaUGCUuUUCAAGUg -3'
miRNA:   3'- uUUGCgGUCGAUGgACGAcAAGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 91212 0.69 0.902989
Target:  5'- -cGCGcCCAGUUgaGCUUGUUGUaCAGGCu -3'
miRNA:   3'- uuUGC-GGUCGA--UGGACGACAaGUUCG- -5'
6943 3' -51.6 NC_001875.2 + 42450 0.69 0.902989
Target:  5'- -uGCGUCAGCgGCC-GCUGcggCGAGCc -3'
miRNA:   3'- uuUGCGGUCGaUGGaCGACaa-GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.