miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6946 3' -52.3 NC_001875.2 + 89962 0.65 0.979629
Target:  5'- cGCGGCGaCAGGUGuuggacgagcaGUUGUugcagcucgccgccGcGGCGCGgCa -3'
miRNA:   3'- -CGCCGC-GUUUAU-----------UAACA--------------C-CCGCGCgG- -5'
6946 3' -52.3 NC_001875.2 + 119673 0.65 0.979629
Target:  5'- gGCGGCGCAcagcggcuucagccGAaagcgcUGGUUGcgcucGGGCucuuccGCGCCg -3'
miRNA:   3'- -CGCCGCGU--------------UU------AUUAACa----CCCG------CGCGG- -5'
6946 3' -52.3 NC_001875.2 + 89344 0.65 0.979169
Target:  5'- uGCGGCGCAcgcggacgacGGCGUGCg -3'
miRNA:   3'- -CGCCGCGUuuauuaacacCCGCGCGg -5'
6946 3' -52.3 NC_001875.2 + 6160 0.66 0.978936
Target:  5'- -aGGUcuuGCAGGUAAUugguccuuucgauuuUGUGcccGCGCGCCg -3'
miRNA:   3'- cgCCG---CGUUUAUUA---------------ACACc--CGCGCGG- -5'
6946 3' -52.3 NC_001875.2 + 2663 0.66 0.978936
Target:  5'- uGCGGCGCcggcggcgccugGGGCaacugcgGCGCCu -3'
miRNA:   3'- -CGCCGCGuuuauuaaca--CCCG-------CGCGG- -5'
6946 3' -52.3 NC_001875.2 + 110908 0.66 0.977984
Target:  5'- cGCGG-GCGuuUGAgcUGgccauGGCGCGCCc -3'
miRNA:   3'- -CGCCgCGUuuAUUa-ACac---CCGCGCGG- -5'
6946 3' -52.3 NC_001875.2 + 44463 0.66 0.977984
Target:  5'- uCGGCGCAGugcgccaAGUcGUGcaccGGCGCGaCCa -3'
miRNA:   3'- cGCCGCGUUua-----UUAaCAC----CCGCGC-GG- -5'
6946 3' -52.3 NC_001875.2 + 105160 0.66 0.977984
Target:  5'- cGCGGCGCG------UGuUGGGCGaaGUCa -3'
miRNA:   3'- -CGCCGCGUuuauuaAC-ACCCGCg-CGG- -5'
6946 3' -52.3 NC_001875.2 + 89910 0.66 0.977984
Target:  5'- cGCcGCGCAuAUAAagG-GcGGCGCGUCc -3'
miRNA:   3'- -CGcCGCGUuUAUUaaCaC-CCGCGCGG- -5'
6946 3' -52.3 NC_001875.2 + 9970 0.66 0.977984
Target:  5'- cGUGGUGCA----AUUGacGGCGUGCa -3'
miRNA:   3'- -CGCCGCGUuuauUAACacCCGCGCGg -5'
6946 3' -52.3 NC_001875.2 + 61210 0.66 0.977984
Target:  5'- cGCGGCGCcgucguacAAAUGuucg-GGGCaggccauguaGCGCCc -3'
miRNA:   3'- -CGCCGCG--------UUUAUuaacaCCCG----------CGCGG- -5'
6946 3' -52.3 NC_001875.2 + 22453 0.66 0.97725
Target:  5'- cGUGGCGC-GGUGGUugagcuugaUGUccacgaacgccacgGGGCGCGUUu -3'
miRNA:   3'- -CGCCGCGuUUAUUA---------ACA--------------CCCGCGCGG- -5'
6946 3' -52.3 NC_001875.2 + 52316 0.66 0.976243
Target:  5'- uGUGGCGCAuacacgccaacgucaAGUUuucGGCGCGCCu -3'
miRNA:   3'- -CGCCGCGUuua------------UUAAcacCCGCGCGG- -5'
6946 3' -52.3 NC_001875.2 + 54460 0.66 0.975727
Target:  5'- cGCGGCGCcgcacagcgUGUGcGGCaggacuucGCGCUu -3'
miRNA:   3'- -CGCCGCGuuuauua--ACAC-CCG--------CGCGG- -5'
6946 3' -52.3 NC_001875.2 + 55723 0.66 0.975466
Target:  5'- cGUGGCGCuggaaaagGAgcgcuacGGCGCGCCc -3'
miRNA:   3'- -CGCCGCGuuua----UUaacac--CCGCGCGG- -5'
6946 3' -52.3 NC_001875.2 + 54951 0.66 0.975466
Target:  5'- cGUGGUGCuu---GUUGUaGGCGcCGUCg -3'
miRNA:   3'- -CGCCGCGuuuauUAACAcCCGC-GCGG- -5'
6946 3' -52.3 NC_001875.2 + 110715 0.66 0.975466
Target:  5'- cGUGGCuuucGCAAcgGAgaacgcgGGGCGCGUg -3'
miRNA:   3'- -CGCCG----CGUUuaUUaaca---CCCGCGCGg -5'
6946 3' -52.3 NC_001875.2 + 125414 0.66 0.975466
Target:  5'- aCGGCGCGcaAAUGGUgaagaUGGGCuuGCUg -3'
miRNA:   3'- cGCCGCGU--UUAUUAac---ACCCGcgCGG- -5'
6946 3' -52.3 NC_001875.2 + 57747 0.66 0.974672
Target:  5'- aCGGCgucgcugcccaacuGCAGGUu-UUGcgagGGGCGCGCa -3'
miRNA:   3'- cGCCG--------------CGUUUAuuAACa---CCCGCGCGg -5'
6946 3' -52.3 NC_001875.2 + 85839 0.66 0.972745
Target:  5'- cGUcGUGCAccgcguuGUUGUGGuGCGCGUCc -3'
miRNA:   3'- -CGcCGCGUuuau---UAACACC-CGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.