miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6947 3' -50.4 NC_001875.2 + 26160 0.66 0.994477
Target:  5'- -gACgGGCGCGGuguguGGGUGGccggcaaggagcuGGUGAAGCg -3'
miRNA:   3'- cgUGgCUGUGCC-----CCUAUC-------------UCAUUUCG- -5'
6947 3' -50.4 NC_001875.2 + 84915 0.66 0.992705
Target:  5'- aGCGCa-GCACGGGGcUGGc--GAAGCa -3'
miRNA:   3'- -CGUGgcUGUGCCCCuAUCucaUUUCG- -5'
6947 3' -50.4 NC_001875.2 + 68508 0.66 0.992388
Target:  5'- uGCACgaCGACACGGuGGAaguuuuugauuuucUGGAGc--AGCg -3'
miRNA:   3'- -CGUG--GCUGUGCC-CCU--------------AUCUCauuUCG- -5'
6947 3' -50.4 NC_001875.2 + 3148 0.66 0.991606
Target:  5'- uGCGCgGACGCGgcgucGGGcgGcGAGUAgguGAGCc -3'
miRNA:   3'- -CGUGgCUGUGC-----CCCuaU-CUCAU---UUCG- -5'
6947 3' -50.4 NC_001875.2 + 94677 0.67 0.985842
Target:  5'- aGCGCgCGGCACGGGuGcUGGAacccGGCg -3'
miRNA:   3'- -CGUG-GCUGUGCCC-CuAUCUcauuUCG- -5'
6947 3' -50.4 NC_001875.2 + 11569 0.67 0.984013
Target:  5'- cCGCCGAaGCGGGGAgc-GGUGu-GCg -3'
miRNA:   3'- cGUGGCUgUGCCCCUaucUCAUuuCG- -5'
6947 3' -50.4 NC_001875.2 + 28842 0.67 0.983821
Target:  5'- -gGCCGACACGGacggcGGGcacuugucgccgcUAGAGUAcgcuugGGGCg -3'
miRNA:   3'- cgUGGCUGUGCC-----CCU-------------AUCUCAU------UUCG- -5'
6947 3' -50.4 NC_001875.2 + 64722 0.68 0.979825
Target:  5'- gGCGCUGGCcaagGCGGGcGAcguGGGcGAAGCg -3'
miRNA:   3'- -CGUGGCUG----UGCCC-CUau-CUCaUUUCG- -5'
6947 3' -50.4 NC_001875.2 + 125126 0.68 0.977448
Target:  5'- aGCGCaauuGugGCGGGGcAUGGuGUAcaaauGGCg -3'
miRNA:   3'- -CGUGg---CugUGCCCC-UAUCuCAUu----UCG- -5'
6947 3' -50.4 NC_001875.2 + 116911 0.68 0.972085
Target:  5'- -aGCCGcGCGCGGcGGGUGGcgcacaaugacGUAGAGCa -3'
miRNA:   3'- cgUGGC-UGUGCC-CCUAUCu----------CAUUUCG- -5'
6947 3' -50.4 NC_001875.2 + 50513 0.68 0.972085
Target:  5'- cGCGCCG-CGCGGcacGAUGacGAGgagGAGGCg -3'
miRNA:   3'- -CGUGGCuGUGCCc--CUAU--CUCa--UUUCG- -5'
6947 3' -50.4 NC_001875.2 + 72567 0.69 0.969083
Target:  5'- gGCGCgGGCGCGGGcGcUGcGGGUGcGGGCg -3'
miRNA:   3'- -CGUGgCUGUGCCC-CuAU-CUCAU-UUCG- -5'
6947 3' -50.4 NC_001875.2 + 113425 0.69 0.965859
Target:  5'- cGCGCCGAgUACGcaauGGGAguuuuGGUGAAGCc -3'
miRNA:   3'- -CGUGGCU-GUGC----CCCUauc--UCAUUUCG- -5'
6947 3' -50.4 NC_001875.2 + 35356 0.69 0.965859
Target:  5'- -gGCCGAgauaCACGGGcaGGUGGAGcagcugGAGGCg -3'
miRNA:   3'- cgUGGCU----GUGCCC--CUAUCUCa-----UUUCG- -5'
6947 3' -50.4 NC_001875.2 + 11831 0.69 0.965859
Target:  5'- cGCGCCgGugGCGGGGucGGuGUAAAucauGCu -3'
miRNA:   3'- -CGUGG-CugUGCCCCuaUCuCAUUU----CG- -5'
6947 3' -50.4 NC_001875.2 + 11978 0.69 0.958333
Target:  5'- aGCACUggcgacggcguugGGCGCGGGuGUGGuGgcGAGCg -3'
miRNA:   3'- -CGUGG-------------CUGUGCCCcUAUCuCauUUCG- -5'
6947 3' -50.4 NC_001875.2 + 23827 0.69 0.954784
Target:  5'- cGCGCCGugucuCugGcGGGUGGGGUuAAAGUg -3'
miRNA:   3'- -CGUGGCu----GugCcCCUAUCUCA-UUUCG- -5'
6947 3' -50.4 NC_001875.2 + 14424 0.7 0.936563
Target:  5'- cCACCGGCAUGGGcg-GGGGUAcGGg -3'
miRNA:   3'- cGUGGCUGUGCCCcuaUCUCAUuUCg -5'
6947 3' -50.4 NC_001875.2 + 21957 0.7 0.931369
Target:  5'- ---gCGGCGCGGGGAUGGGcGgcGccAGCg -3'
miRNA:   3'- cgugGCUGUGCCCCUAUCU-CauU--UCG- -5'
6947 3' -50.4 NC_001875.2 + 5914 0.72 0.894792
Target:  5'- aGCGCCGGCAUGGcguuGGGUAGcgccgcgcaGGUGGGcGCg -3'
miRNA:   3'- -CGUGGCUGUGCC----CCUAUC---------UCAUUU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.