Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 22219 | 0.66 | 0.719049 |
|
Target: 5'- uUCUGGCGGGaGUCAaagUgaCCCgCGGGCa -3' miRNA: 3'- -GGACCGUCUgUAGUa--GaaGGG-GCUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 16006 | 0.66 | 0.707918 |
|
Target: 5'- aCCUGGUcGAucaCAUCAUCgaCCgugguCCGAGUg -3' miRNA: 3'- -GGACCGuCU---GUAGUAGaaGG-----GGCUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 719 | 0.66 | 0.696706 |
|
Target: 5'- aCUGGCGGuuccGgGUCGUCU-CCCauuaGGGUa -3' miRNA: 3'- gGACCGUC----UgUAGUAGAaGGGg---CUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 11261 | 0.66 | 0.674093 |
|
Target: 5'- aCUGGCgcgccuGGGCGcacCAUCg--CCCGAGCg -3' miRNA: 3'- gGACCG------UCUGUa--GUAGaagGGGCUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 23981 | 0.66 | 0.674093 |
|
Target: 5'- --aGGCAGAUGUCGagcaggaCCCGGGCu -3' miRNA: 3'- ggaCCGUCUGUAGUagaag--GGGCUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 10989 | 0.66 | 0.674093 |
|
Target: 5'- aCUGGCgcgccuGGGCGcacCAUCg--CCCGAGCg -3' miRNA: 3'- gGACCG------UCUGUa--GUAGaagGGGCUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 14365 | 0.69 | 0.515947 |
|
Target: 5'- --cGGCGGACAUCG-CcUCCCUGAa- -3' miRNA: 3'- ggaCCGUCUGUAGUaGaAGGGGCUcg -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 8477 | 0.7 | 0.452347 |
|
Target: 5'- gCUGGCAGugGUaCGUCggCgCCGcGCg -3' miRNA: 3'- gGACCGUCugUA-GUAGaaGgGGCuCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 5177 | 0.7 | 0.441151 |
|
Target: 5'- cCCUGGCAGcgcuggacgccCAUCGUCUgauUCCCUacuccagGAGCc -3' miRNA: 3'- -GGACCGUCu----------GUAGUAGA---AGGGG-------CUCG- -5' |
|||||||
| 695 | 3' | -53.6 | AC_000018.1 | + | 25285 | 1.15 | 0.000326 |
|
Target: 5'- aCCUGGCAGACAUCAUCUUCCCCGAGCg -3' miRNA: 3'- -GGACCGUCUGUAGUAGAAGGGGCUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home