miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6951 3' -54.1 NC_001875.2 + 43608 0.65 0.951584
Target:  5'- ----cGGCGCGcgccgcuugCGCCGUuuuuGCCCa -3'
miRNA:   3'- acaaaCCGCGCaaaa-----GCGGCAc---CGGG- -5'
6951 3' -54.1 NC_001875.2 + 60851 0.66 0.948179
Target:  5'- gUGUUgcUGG-GCGUUUccaggcUCGUgGcGGCCCg -3'
miRNA:   3'- -ACAA--ACCgCGCAAA------AGCGgCaCCGGG- -5'
6951 3' -54.1 NC_001875.2 + 115556 0.66 0.948179
Target:  5'- ---cUGGCGCacauggacGUgcggUCGCCG-GGCaCCa -3'
miRNA:   3'- acaaACCGCG--------CAaa--AGCGGCaCCG-GG- -5'
6951 3' -54.1 NC_001875.2 + 33245 0.66 0.948179
Target:  5'- cGUUUcGGCGCGgcgcUCcgaguugcaaaaGCCGUcGCCCu -3'
miRNA:   3'- aCAAA-CCGCGCaaa-AG------------CGGCAcCGGG- -5'
6951 3' -54.1 NC_001875.2 + 115819 0.66 0.943706
Target:  5'- gUGUUggUGGCGaCGUUgaccUCGC---GGCCCa -3'
miRNA:   3'- -ACAA--ACCGC-GCAAa---AGCGgcaCCGGG- -5'
6951 3' -54.1 NC_001875.2 + 63987 0.66 0.943706
Target:  5'- ---cUGGCGaCGcac-CGCCGUcGCCCa -3'
miRNA:   3'- acaaACCGC-GCaaaaGCGGCAcCGGG- -5'
6951 3' -54.1 NC_001875.2 + 22588 0.66 0.943706
Target:  5'- ----cGGCGCGUUg--GCCGgccGGCUg -3'
miRNA:   3'- acaaaCCGCGCAAaagCGGCa--CCGGg -5'
6951 3' -54.1 NC_001875.2 + 90468 0.66 0.943246
Target:  5'- ----cGGCGCGUaaUUUCGCugcagcgcgCGUucaaacugcgcgcGGCCCa -3'
miRNA:   3'- acaaaCCGCGCA--AAAGCG---------GCA-------------CCGGG- -5'
6951 3' -54.1 NC_001875.2 + 9311 0.66 0.938988
Target:  5'- gGUUUGGCGUGga-----CG-GGCCCa -3'
miRNA:   3'- aCAAACCGCGCaaaagcgGCaCCGGG- -5'
6951 3' -54.1 NC_001875.2 + 129923 0.66 0.938988
Target:  5'- uUGUuaaUUGGCgGCGgca-UGCuCGUGGCCa -3'
miRNA:   3'- -ACA---AACCG-CGCaaaaGCG-GCACCGGg -5'
6951 3' -54.1 NC_001875.2 + 98738 0.66 0.938988
Target:  5'- gGUcgUGGUGCGUgcUCaGCCGcgacGGCgCCg -3'
miRNA:   3'- aCAa-ACCGCGCAaaAG-CGGCa---CCG-GG- -5'
6951 3' -54.1 NC_001875.2 + 80818 0.66 0.938988
Target:  5'- ---gUGGCuGUGg---CGCCGuUGGCCUu -3'
miRNA:   3'- acaaACCG-CGCaaaaGCGGC-ACCGGG- -5'
6951 3' -54.1 NC_001875.2 + 37109 0.66 0.938988
Target:  5'- gUGUgcgGGCGCGg---CGCCGc-GCCg -3'
miRNA:   3'- -ACAaa-CCGCGCaaaaGCGGCacCGGg -5'
6951 3' -54.1 NC_001875.2 + 29419 0.66 0.938988
Target:  5'- -----aGCGCaccucgUCGCCGcGGCCCa -3'
miRNA:   3'- acaaacCGCGcaaa--AGCGGCaCCGGG- -5'
6951 3' -54.1 NC_001875.2 + 70924 0.66 0.938988
Target:  5'- ----cGGUGCGUcagCGCC--GGCCCc -3'
miRNA:   3'- acaaaCCGCGCAaaaGCGGcaCCGGG- -5'
6951 3' -54.1 NC_001875.2 + 63885 0.66 0.938503
Target:  5'- ----aGGUGUGgaauaguaagaagcgCGCCGUGGCgCCg -3'
miRNA:   3'- acaaaCCGCGCaaaa-----------GCGGCACCG-GG- -5'
6951 3' -54.1 NC_001875.2 + 40109 0.66 0.934024
Target:  5'- cUGgcUGGCGCuGUacUUGCCGacGGCCg -3'
miRNA:   3'- -ACaaACCGCG-CAaaAGCGGCa-CCGGg -5'
6951 3' -54.1 NC_001875.2 + 10138 0.66 0.931968
Target:  5'- aGUUcgGGCGUGUUccgcaagcgcggCGUgGUGGCCg -3'
miRNA:   3'- aCAAa-CCGCGCAAaa----------GCGgCACCGGg -5'
6951 3' -54.1 NC_001875.2 + 99364 0.67 0.92335
Target:  5'- ----gGGCGCGcc--CGCCaaGUGGCCa -3'
miRNA:   3'- acaaaCCGCGCaaaaGCGG--CACCGGg -5'
6951 3' -54.1 NC_001875.2 + 71117 0.67 0.92335
Target:  5'- cGUUUGGUGU-----UGCUGUGGCUg -3'
miRNA:   3'- aCAAACCGCGcaaaaGCGGCACCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.