miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6952 3' -55.1 NC_001875.2 + 91365 0.66 0.875769
Target:  5'- --uGCGCgACAUG-ACgcCCGGCACCa -3'
miRNA:   3'- uuuCGCGgUGUGCaUGa-GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 22582 0.66 0.875769
Target:  5'- cGGGCGCgGCGCGUugGCcggCCGGCugUa -3'
miRNA:   3'- uUUCGCGgUGUGCA--UGa--GGCUGugGa -5'
6952 3' -55.1 NC_001875.2 + 65232 0.66 0.875769
Target:  5'- --cGCGCCACGC-UGC-CCGACAa-- -3'
miRNA:   3'- uuuCGCGGUGUGcAUGaGGCUGUgga -5'
6952 3' -55.1 NC_001875.2 + 99876 0.67 0.868262
Target:  5'- --cGCGCCACACGcguucguCgucgCCGGCAgCCUc -3'
miRNA:   3'- uuuCGCGGUGUGCau-----Ga---GGCUGU-GGA- -5'
6952 3' -55.1 NC_001875.2 + 79328 0.67 0.868262
Target:  5'- uGAGCGCgGCGCugcCUuuGGCGCCg -3'
miRNA:   3'- uUUCGCGgUGUGcauGAggCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 81890 0.67 0.868262
Target:  5'- -cAGCGCgCGCA---GCUCCGACgACCa -3'
miRNA:   3'- uuUCGCG-GUGUgcaUGAGGCUG-UGGa -5'
6952 3' -55.1 NC_001875.2 + 56277 0.67 0.868262
Target:  5'- -cAGCGCUAuCACcaACgCCGACGCCa -3'
miRNA:   3'- uuUCGCGGU-GUGcaUGaGGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 64088 0.67 0.868262
Target:  5'- -uGGCGCCgACAgacCGUACagCGACAUCa -3'
miRNA:   3'- uuUCGCGG-UGU---GCAUGagGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 61511 0.67 0.868262
Target:  5'- -cGGCGCCGCaguccGCGUGCUC--GCGCUUg -3'
miRNA:   3'- uuUCGCGGUG-----UGCAUGAGgcUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 100085 0.67 0.860532
Target:  5'- --cGCGCUugGCACcUACUCCGACuAUCg -3'
miRNA:   3'- uuuCGCGG--UGUGcAUGAGGCUG-UGGa -5'
6952 3' -55.1 NC_001875.2 + 44472 0.67 0.860532
Target:  5'- --uGCGCCAaguCGUGCaCCGGCGCg- -3'
miRNA:   3'- uuuCGCGGUgu-GCAUGaGGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 88891 0.67 0.860532
Target:  5'- --cGCGCUGCGCGgGCUgCUGACGCa- -3'
miRNA:   3'- uuuCGCGGUGUGCaUGA-GGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 89254 0.67 0.860532
Target:  5'- -cAGCGCCgagcugacgcGCGCGUGCgCCGAC-CUg -3'
miRNA:   3'- uuUCGCGG----------UGUGCAUGaGGCUGuGGa -5'
6952 3' -55.1 NC_001875.2 + 31252 0.67 0.860532
Target:  5'- -cGGCGCCcggccCGCGUACgcgUCGACGCa- -3'
miRNA:   3'- uuUCGCGGu----GUGCAUGa--GGCUGUGga -5'
6952 3' -55.1 NC_001875.2 + 79914 0.67 0.852585
Target:  5'- -uAGCGCCGCACGcugUGCagCGGCGgCa -3'
miRNA:   3'- uuUCGCGGUGUGC---AUGagGCUGUgGa -5'
6952 3' -55.1 NC_001875.2 + 32441 0.67 0.852585
Target:  5'- --uGCGCUGCGCG-ACccgCUGGCGCCg -3'
miRNA:   3'- uuuCGCGGUGUGCaUGa--GGCUGUGGa -5'
6952 3' -55.1 NC_001875.2 + 57506 0.67 0.852585
Target:  5'- gAAAGC-CCACuuuuugacgccCGUGCugUCCGGCGCCUg -3'
miRNA:   3'- -UUUCGcGGUGu----------GCAUG--AGGCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 2674 0.67 0.852585
Target:  5'- -cGGCGCCugGgGcaACUgCGGCGCCUc -3'
miRNA:   3'- uuUCGCGGugUgCa-UGAgGCUGUGGA- -5'
6952 3' -55.1 NC_001875.2 + 39981 0.67 0.852585
Target:  5'- cAGGCGCC-CugGggGC-CCGugGCCg -3'
miRNA:   3'- uUUCGCGGuGugCa-UGaGGCugUGGa -5'
6952 3' -55.1 NC_001875.2 + 99384 0.67 0.852585
Target:  5'- cAAAGCGCCGCAC---CggCGGCGCCa -3'
miRNA:   3'- -UUUCGCGGUGUGcauGagGCUGUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.