miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6956 3' -53.7 NC_001875.2 + 69388 0.66 0.963999
Target:  5'- uCCACcgAAACGCacguggucacGACCuugcAGCCgGcgCAGCg -3'
miRNA:   3'- -GGUG--UUUGCG----------CUGG----UCGGgCuaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 32920 0.66 0.963999
Target:  5'- gCGCAcGCGCaACCGcGCCgCGAgcuaCGGCg -3'
miRNA:   3'- gGUGUuUGCGcUGGU-CGG-GCUa---GUCG- -5'
6956 3' -53.7 NC_001875.2 + 92178 0.66 0.963999
Target:  5'- gCCGCc-GCGCGccGCCGGCCCaaacUCGcGCg -3'
miRNA:   3'- -GGUGuuUGCGC--UGGUCGGGcu--AGU-CG- -5'
6956 3' -53.7 NC_001875.2 + 95510 0.66 0.963999
Target:  5'- gCCGCGuacACGCGcaaCAGCCC---CAGCg -3'
miRNA:   3'- -GGUGUu--UGCGCug-GUCGGGcuaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 67175 0.66 0.963999
Target:  5'- -gGCGGGCGUGGagauggaacGCCCGcgCAGCa -3'
miRNA:   3'- ggUGUUUGCGCUggu------CGGGCuaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 22746 0.66 0.963999
Target:  5'- cCCuCAAugGCGGCCAGCaaGuuguUCAacguGCu -3'
miRNA:   3'- -GGuGUUugCGCUGGUCGggCu---AGU----CG- -5'
6956 3' -53.7 NC_001875.2 + 32795 0.66 0.963999
Target:  5'- -gGCGGGCGCcgcGCCGGCaaGcUCGGCg -3'
miRNA:   3'- ggUGUUUGCGc--UGGUCGggCuAGUCG- -5'
6956 3' -53.7 NC_001875.2 + 124830 0.66 0.963999
Target:  5'- gUCAgAuACGCGccGCCGGCCag--CAGCa -3'
miRNA:   3'- -GGUgUuUGCGC--UGGUCGGgcuaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 87335 0.66 0.963999
Target:  5'- gCCGCAAACGUuACCgcgcaaAGCCCaauGUCGGa -3'
miRNA:   3'- -GGUGUUUGCGcUGG------UCGGGc--UAGUCg -5'
6956 3' -53.7 NC_001875.2 + 1457 0.66 0.961932
Target:  5'- gCgGCAAACGCaGGCCucucuuccgcaacaaAcGCCCuuuGAUCAGCc -3'
miRNA:   3'- -GgUGUUUGCG-CUGG---------------U-CGGG---CUAGUCG- -5'
6956 3' -53.7 NC_001875.2 + 53482 0.66 0.960509
Target:  5'- aUCACuccuGCGCGAugUCGGCCaugCGGUUGGCc -3'
miRNA:   3'- -GGUGuu--UGCGCU--GGUCGG---GCUAGUCG- -5'
6956 3' -53.7 NC_001875.2 + 76738 0.66 0.960509
Target:  5'- aCGCGGACGcCGACgAGCCgaUGAUCu-- -3'
miRNA:   3'- gGUGUUUGC-GCUGgUCGG--GCUAGucg -5'
6956 3' -53.7 NC_001875.2 + 114980 0.66 0.960509
Target:  5'- aCCAgGGGCGUacacGugC-GCCCGcgUAGCg -3'
miRNA:   3'- -GGUgUUUGCG----CugGuCGGGCuaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 70321 0.66 0.960509
Target:  5'- gCCGcCAAGCGCGAgCacgcggacugcGGCgCCGAgcCGGCg -3'
miRNA:   3'- -GGU-GUUUGCGCUgG-----------UCG-GGCUa-GUCG- -5'
6956 3' -53.7 NC_001875.2 + 102894 0.66 0.960509
Target:  5'- aCCGCAcauugaGCGGCCGGCCguUGA--AGCg -3'
miRNA:   3'- -GGUGUuug---CGCUGGUCGG--GCUagUCG- -5'
6956 3' -53.7 NC_001875.2 + 38306 0.66 0.960509
Target:  5'- -gGCGAGCGcCGACaAGgCCGG-CGGCa -3'
miRNA:   3'- ggUGUUUGC-GCUGgUCgGGCUaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 28363 0.66 0.960509
Target:  5'- gCCACAuugGCGACCAGUuuG-UCAa- -3'
miRNA:   3'- -GGUGUuugCGCUGGUCGggCuAGUcg -5'
6956 3' -53.7 NC_001875.2 + 90200 0.66 0.960509
Target:  5'- aCCaACAAGCGCGGCuCGGaCCUGuUCGa- -3'
miRNA:   3'- -GG-UGUUUGCGCUG-GUC-GGGCuAGUcg -5'
6956 3' -53.7 NC_001875.2 + 64374 0.66 0.960509
Target:  5'- aCCAggcUGAACaCGGCCAGCgCGccCAGCa -3'
miRNA:   3'- -GGU---GUUUGcGCUGGUCGgGCuaGUCG- -5'
6956 3' -53.7 NC_001875.2 + 55397 0.66 0.960509
Target:  5'- gCCGCcAGCGCG-CCc-CCCGAUauugaccugCAGCa -3'
miRNA:   3'- -GGUGuUUGCGCuGGucGGGCUA---------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.