miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6956 5' -62 NC_001875.2 + 120937 0.65 0.663947
Target:  5'- uGGCUGaACCACUuuugcgccaacacGUUgCGCGGcagcgccaccgacGCGGCc -3'
miRNA:   3'- gCCGGC-UGGUGA-------------CAAgGCGCC-------------CGCCG- -5'
6956 5' -62 NC_001875.2 + 19473 0.66 0.656111
Target:  5'- aGGCuCGGgCGCUGg--UGCuGGCGGCu -3'
miRNA:   3'- gCCG-GCUgGUGACaagGCGcCCGCCG- -5'
6956 5' -62 NC_001875.2 + 29273 0.66 0.656111
Target:  5'- -cGCCGACCGCg---CCgGCGGggcGCGGUc -3'
miRNA:   3'- gcCGGCUGGUGacaaGG-CGCC---CGCCG- -5'
6956 5' -62 NC_001875.2 + 41021 0.66 0.6463
Target:  5'- aGGUCGccaACCGCguggCCGUGGaCGGCg -3'
miRNA:   3'- gCCGGC---UGGUGacaaGGCGCCcGCCG- -5'
6956 5' -62 NC_001875.2 + 130952 0.66 0.6463
Target:  5'- uGGCCGACUGCgccGUUCuCGCGcccaaaGUGGUc -3'
miRNA:   3'- gCCGGCUGGUGa--CAAG-GCGCc-----CGCCG- -5'
6956 5' -62 NC_001875.2 + 4535 0.66 0.6463
Target:  5'- -cGCCGGCUGCgGUUCCuGCGGuuugGgGGCc -3'
miRNA:   3'- gcCGGCUGGUGaCAAGG-CGCC----CgCCG- -5'
6956 5' -62 NC_001875.2 + 57399 0.66 0.6463
Target:  5'- aGGCCGAagggGCUGcuuaUGCaGGCGGCg -3'
miRNA:   3'- gCCGGCUgg--UGACaag-GCGcCCGCCG- -5'
6956 5' -62 NC_001875.2 + 13493 0.66 0.640407
Target:  5'- gGGCCG-CCGCUGUucaaaaacagguucaUCaccugcaGCGcGCGGCc -3'
miRNA:   3'- gCCGGCuGGUGACA---------------AGg------CGCcCGCCG- -5'
6956 5' -62 NC_001875.2 + 7041 0.66 0.636478
Target:  5'- uGGCCGcgcgcuugucgGCCug-GUUCCGCu-GCGGCg -3'
miRNA:   3'- gCCGGC-----------UGGugaCAAGGCGccCGCCG- -5'
6956 5' -62 NC_001875.2 + 9712 0.66 0.636478
Target:  5'- gCGcGCCGGCCGCg---CCGCGcccgaagcGUGGCa -3'
miRNA:   3'- -GC-CGGCUGGUGacaaGGCGCc-------CGCCG- -5'
6956 5' -62 NC_001875.2 + 22822 0.66 0.636478
Target:  5'- gCGGuCCGACgGCa---CCGUcGGCGGCa -3'
miRNA:   3'- -GCC-GGCUGgUGacaaGGCGcCCGCCG- -5'
6956 5' -62 NC_001875.2 + 33548 0.66 0.630583
Target:  5'- aCGcGuuGGCCACaGUgcggucgCCGCGGGgcaccaugcccgaguCGGCg -3'
miRNA:   3'- -GC-CggCUGGUGaCAa------GGCGCCC---------------GCCG- -5'
6956 5' -62 NC_001875.2 + 37587 0.66 0.626653
Target:  5'- cCGGCgCGagcGCCGCggccggCCGCacGGCGGCg -3'
miRNA:   3'- -GCCG-GC---UGGUGacaa--GGCGc-CCGCCG- -5'
6956 5' -62 NC_001875.2 + 39623 0.66 0.626653
Target:  5'- gCGGCCGGCCcCggcagUCGaCGguGGCGGCg -3'
miRNA:   3'- -GCCGGCUGGuGacaa-GGC-GC--CCGCCG- -5'
6956 5' -62 NC_001875.2 + 113606 0.66 0.626653
Target:  5'- uCGaGUCGGCgGC-GggCCGC-GGCGGCa -3'
miRNA:   3'- -GC-CGGCUGgUGaCaaGGCGcCCGCCG- -5'
6956 5' -62 NC_001875.2 + 111904 0.66 0.626653
Target:  5'- gCGcGCCGGCCGC---UCCGUguacGGGcCGGUg -3'
miRNA:   3'- -GC-CGGCUGGUGacaAGGCG----CCC-GCCG- -5'
6956 5' -62 NC_001875.2 + 39667 0.66 0.616833
Target:  5'- gGGCCGGCgGCg----CGC-GGCGGCg -3'
miRNA:   3'- gCCGGCUGgUGacaagGCGcCCGCCG- -5'
6956 5' -62 NC_001875.2 + 125727 0.66 0.616833
Target:  5'- aGGCCaGCCAaaUUGacgagcagugUuuGUGGGCGGCu -3'
miRNA:   3'- gCCGGcUGGU--GACa---------AggCGCCCGCCG- -5'
6956 5' -62 NC_001875.2 + 109104 0.66 0.616833
Target:  5'- uGGCCG-CCAUUGaggguauaggCgGCGacGGCGGCg -3'
miRNA:   3'- gCCGGCuGGUGACaa--------GgCGC--CCGCCG- -5'
6956 5' -62 NC_001875.2 + 73664 0.66 0.616833
Target:  5'- nCGGCUG-CgGCUGcugCUGCG-GCGGCu -3'
miRNA:   3'- -GCCGGCuGgUGACaa-GGCGCcCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.