miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6957 3' -55.9 NC_001875.2 + 88685 0.66 0.898916
Target:  5'- aGUCGUuugUGGGCaaCC-GCUUG-GCGGAa -3'
miRNA:   3'- gCAGCA---ACUCGc-GGuCGAACuCGCCU- -5'
6957 3' -55.9 NC_001875.2 + 102901 0.66 0.885414
Target:  5'- ----aUUGAGCgGCCGGCcgUUGAaGCGGAg -3'
miRNA:   3'- gcagcAACUCG-CGGUCG--AACU-CGCCU- -5'
6957 3' -55.9 NC_001875.2 + 39680 0.66 0.885414
Target:  5'- gCGgCGgcGAGCuGCUagAGUUUGAGCGGu -3'
miRNA:   3'- -GCaGCaaCUCG-CGG--UCGAACUCGCCu -5'
6957 3' -55.9 NC_001875.2 + 5906 0.66 0.878317
Target:  5'- aGUCGUacAGCGCCGGCaUG-GCGu- -3'
miRNA:   3'- gCAGCAacUCGCGGUCGaACuCGCcu -5'
6957 3' -55.9 NC_001875.2 + 102431 0.66 0.878317
Target:  5'- cCGUUGccGAGCGCCGGgUUG-GCGc- -3'
miRNA:   3'- -GCAGCaaCUCGCGGUCgAACuCGCcu -5'
6957 3' -55.9 NC_001875.2 + 117300 0.66 0.870996
Target:  5'- cCG-CGU---GCGCCAGCUcacucuuguUGAGCGGc -3'
miRNA:   3'- -GCaGCAacuCGCGGUCGA---------ACUCGCCu -5'
6957 3' -55.9 NC_001875.2 + 16293 0.66 0.863456
Target:  5'- aCGUCcaUGuGCGCCAGCaUUGuGGaCGGGu -3'
miRNA:   3'- -GCAGcaACuCGCGGUCG-AAC-UC-GCCU- -5'
6957 3' -55.9 NC_001875.2 + 98414 0.66 0.86038
Target:  5'- aCGUUGUguuucaagcggacGAGCGCCAGCUcagccacGAGCGc- -3'
miRNA:   3'- -GCAGCAa------------CUCGCGGUCGAa------CUCGCcu -5'
6957 3' -55.9 NC_001875.2 + 18582 0.67 0.855703
Target:  5'- gCGUCGUUG-GCGCCuauuGCgcguucaGGCGGu -3'
miRNA:   3'- -GCAGCAACuCGCGGu---CGaac----UCGCCu -5'
6957 3' -55.9 NC_001875.2 + 86105 0.68 0.805094
Target:  5'- --aCGUUGAGCauuuCCAGCUcgGcGGCGGAg -3'
miRNA:   3'- gcaGCAACUCGc---GGUCGAa-C-UCGCCU- -5'
6957 3' -55.9 NC_001875.2 + 60198 0.68 0.79605
Target:  5'- -uUCGUUGAauuGCGCCGGCggcagaUUGaAGCGGc -3'
miRNA:   3'- gcAGCAACU---CGCGGUCG------AAC-UCGCCu -5'
6957 3' -55.9 NC_001875.2 + 31592 0.68 0.79605
Target:  5'- gGUgGUguccGGCGCCGuGCcgUGGGCGGAc -3'
miRNA:   3'- gCAgCAac--UCGCGGU-CGa-ACUCGCCU- -5'
6957 3' -55.9 NC_001875.2 + 72080 0.68 0.786855
Target:  5'- aCGUCGUUGGGCGCCGuGgUUucGCGc- -3'
miRNA:   3'- -GCAGCAACUCGCGGU-CgAAcuCGCcu -5'
6957 3' -55.9 NC_001875.2 + 76713 0.68 0.786855
Target:  5'- cCGUCGgucgcgcUGAGCGUCGGU--GAcGCGGAc -3'
miRNA:   3'- -GCAGCa------ACUCGCGGUCGaaCU-CGCCU- -5'
6957 3' -55.9 NC_001875.2 + 105208 0.69 0.738931
Target:  5'- uGUCGccgUG-GCGCCcucgucauGCUUGGGCGGc -3'
miRNA:   3'- gCAGCa--ACuCGCGGu-------CGAACUCGCCu -5'
6957 3' -55.9 NC_001875.2 + 68951 0.69 0.738931
Target:  5'- cCGUCGUUGucuuccGGCGCCAcGCauUUGcacagcaaGGCGGAa -3'
miRNA:   3'- -GCAGCAAC------UCGCGGU-CG--AAC--------UCGCCU- -5'
6957 3' -55.9 NC_001875.2 + 17299 0.69 0.718025
Target:  5'- gCGUCG-UGAGCGCCgccgauguuaaagAGCUgcuGGCGGu -3'
miRNA:   3'- -GCAGCaACUCGCGG-------------UCGAac-UCGCCu -5'
6957 3' -55.9 NC_001875.2 + 96005 0.7 0.688628
Target:  5'- gCGUCGUcGAGUGCgaCAGCgagauugGGGUGGAc -3'
miRNA:   3'- -GCAGCAaCUCGCG--GUCGaa-----CUCGCCU- -5'
6957 3' -55.9 NC_001875.2 + 85799 0.7 0.675306
Target:  5'- cCGUucaUGUUGugaagcauuuccgcGGCGCCAGCUgcgUGGGCGGc -3'
miRNA:   3'- -GCA---GCAAC--------------UCGCGGUCGA---ACUCGCCu -5'
6957 3' -55.9 NC_001875.2 + 14402 0.71 0.626772
Target:  5'- gGUCGgggggagcguaUGGGCGCCaccGGCaUGGGCGGGg -3'
miRNA:   3'- gCAGCa----------ACUCGCGG---UCGaACUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.