miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6957 5' -61.3 NC_001875.2 + 37522 0.66 0.638876
Target:  5'- gACGCGCccugCcUGGacGCGCCCAACCu-- -3'
miRNA:   3'- gUGCGCGa---GcACC--CGCGGGUUGGcua -5'
6957 5' -61.3 NC_001875.2 + 91389 0.66 0.638876
Target:  5'- cCACGCcCUCG-GGGCuGCCCAcguucUCGAUg -3'
miRNA:   3'- -GUGCGcGAGCaCCCG-CGGGUu----GGCUA- -5'
6957 5' -61.3 NC_001875.2 + 32783 0.66 0.638876
Target:  5'- -uCGCGCggCGUGGGCggGCgCCGcGCCGGc -3'
miRNA:   3'- guGCGCGa-GCACCCG--CG-GGU-UGGCUa -5'
6957 5' -61.3 NC_001875.2 + 16258 0.66 0.638876
Target:  5'- uCACGCGCgugCGUcacGuGGUGCCCGgcgACCGc- -3'
miRNA:   3'- -GUGCGCGa--GCA---C-CCGCGGGU---UGGCua -5'
6957 5' -61.3 NC_001875.2 + 79880 0.66 0.63687
Target:  5'- cCACGCGCgcgCGUGcGGCacgucgcGCCCAaaguagcGCCGc- -3'
miRNA:   3'- -GUGCGCGa--GCAC-CCG-------CGGGU-------UGGCua -5'
6957 5' -61.3 NC_001875.2 + 37360 0.66 0.628842
Target:  5'- cCGCGCGCUCGUGcgaacGCGCgC-GCCGc- -3'
miRNA:   3'- -GUGCGCGAGCACc----CGCGgGuUGGCua -5'
6957 5' -61.3 NC_001875.2 + 127890 0.66 0.627838
Target:  5'- aACG-GUUUGUGGGCGCgCAuuugaacaagcggGCCGAc -3'
miRNA:   3'- gUGCgCGAGCACCCGCGgGU-------------UGGCUa -5'
6957 5' -61.3 NC_001875.2 + 85652 0.66 0.61881
Target:  5'- uCGCGauuuaGCUuaauUGUGGGCGCgCCGGCCu-- -3'
miRNA:   3'- -GUGCg----CGA----GCACCCGCG-GGUUGGcua -5'
6957 5' -61.3 NC_001875.2 + 111961 0.66 0.61881
Target:  5'- gCACGCGuUUCGcaaacGGCGCCCGcgccgcgacgcgGCCGAg -3'
miRNA:   3'- -GUGCGC-GAGCac---CCGCGGGU------------UGGCUa -5'
6957 5' -61.3 NC_001875.2 + 128759 0.66 0.61881
Target:  5'- gCGCGUGCacgcCGUGGGCGacCCCGGCgCGc- -3'
miRNA:   3'- -GUGCGCGa---GCACCCGC--GGGUUG-GCua -5'
6957 5' -61.3 NC_001875.2 + 15001 0.67 0.588801
Target:  5'- aUugGCGgUCGUGgugucuuaucaaGGCGUCCAGCaCGGg -3'
miRNA:   3'- -GugCGCgAGCAC------------CCGCGGGUUG-GCUa -5'
6957 5' -61.3 NC_001875.2 + 54975 0.67 0.588801
Target:  5'- aCGCGuCGCUCGcgcUGGGCGCCUu-UCGu- -3'
miRNA:   3'- -GUGC-GCGAGC---ACCCGCGGGuuGGCua -5'
6957 5' -61.3 NC_001875.2 + 40437 0.67 0.579843
Target:  5'- aCGCGCGCcaucgagaaCGUGGGCaGCCCcgagggcguggugguGCCGGg -3'
miRNA:   3'- -GUGCGCGa--------GCACCCG-CGGGu--------------UGGCUa -5'
6957 5' -61.3 NC_001875.2 + 12303 0.67 0.57885
Target:  5'- gCACGcCGCcgugugCGUGGucaacGCGCCCGGCCa-- -3'
miRNA:   3'- -GUGC-GCGa-----GCACC-----CGCGGGUUGGcua -5'
6957 5' -61.3 NC_001875.2 + 111729 0.67 0.569925
Target:  5'- gACGUGCgCGaacaccugcgaauugGGGCGCCCAucacgugcGCCGAc -3'
miRNA:   3'- gUGCGCGaGCa--------------CCCGCGGGU--------UGGCUa -5'
6957 5' -61.3 NC_001875.2 + 125352 0.67 0.568935
Target:  5'- gUugGCGCggcacuccgCGuUGGGCGCCgUAAUCGAc -3'
miRNA:   3'- -GugCGCGa--------GC-ACCCGCGG-GUUGGCUa -5'
6957 5' -61.3 NC_001875.2 + 76897 0.67 0.568935
Target:  5'- aCGCGCGCgcaaaGggGcGGCGCCCAGCgaCGAc -3'
miRNA:   3'- -GUGCGCGag---Ca-C-CCGCGGGUUG--GCUa -5'
6957 5' -61.3 NC_001875.2 + 33226 0.67 0.568935
Target:  5'- gCGCGgGCUCGccGGGCGCCguuuCGGCgCGGc -3'
miRNA:   3'- -GUGCgCGAGCa-CCCGCGG----GUUG-GCUa -5'
6957 5' -61.3 NC_001875.2 + 56767 0.67 0.568935
Target:  5'- -uCGCGCUUGUuGGCGUCCAcGCCa-- -3'
miRNA:   3'- guGCGCGAGCAcCCGCGGGU-UGGcua -5'
6957 5' -61.3 NC_001875.2 + 81978 0.67 0.559063
Target:  5'- gUugGCGC-CGgcaaGGCGCgCCGGCCGGc -3'
miRNA:   3'- -GugCGCGaGCac--CCGCG-GGUUGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.