miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6958 3' -57.2 NC_001875.2 + 111964 0.67 0.733921
Target:  5'- ---cGCGUUUCGCAaacgGCGCCcgcGCCGc -3'
miRNA:   3'- cacuCGCAAAGCGUga--CGCGG---CGGUu -5'
6958 3' -57.2 NC_001875.2 + 92708 0.67 0.723868
Target:  5'- ---cGCGUUUuuauacuugagCGCGCUGC-CCGCCAGc -3'
miRNA:   3'- cacuCGCAAA-----------GCGUGACGcGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 22904 0.67 0.713732
Target:  5'- uUGGGCGgauuggUCGgGCaGCGCCGCUu- -3'
miRNA:   3'- cACUCGCaa----AGCgUGaCGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 108574 0.67 0.713732
Target:  5'- --cGGCGgugcUgGCGCUGCGCUGCCc- -3'
miRNA:   3'- cacUCGCaa--AgCGUGACGCGGCGGuu -5'
6958 3' -57.2 NC_001875.2 + 3864 0.67 0.713732
Target:  5'- cGUGuGGCacggcaGCACcGCGCCGCCAAg -3'
miRNA:   3'- -CAC-UCGcaaag-CGUGaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 1723 0.67 0.713732
Target:  5'- -cGGGCGcgacaccggUCGCGCcGcCGCCGCCGc -3'
miRNA:   3'- caCUCGCaa-------AGCGUGaC-GCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 108661 0.68 0.693253
Target:  5'- uUGGGCuuagCGCACUGCGaaaCGCUAAu -3'
miRNA:   3'- cACUCGcaaaGCGUGACGCg--GCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 32002 0.68 0.687064
Target:  5'- uGUGAGCGgcggcgacgcagCGCACUGCGaaCUGCUGAu -3'
miRNA:   3'- -CACUCGCaaa---------GCGUGACGC--GGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 110661 0.68 0.682929
Target:  5'- -cGAGCGgga-GCAUUggcuugaccaGCGCCGCCAu -3'
miRNA:   3'- caCUCGCaaagCGUGA----------CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 95244 0.68 0.662159
Target:  5'- -aGGGCGacgCGCagcgGCUGCGCCGCa-- -3'
miRNA:   3'- caCUCGCaaaGCG----UGACGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 17296 0.68 0.662159
Target:  5'- -gGAGCG--UCGUGa-GCGCCGCCGAu -3'
miRNA:   3'- caCUCGCaaAGCGUgaCGCGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 99918 0.68 0.662159
Target:  5'- -cGAGCGggccgcgCGCGCggugcaGCGCgGCCAAg -3'
miRNA:   3'- caCUCGCaaa----GCGUGa-----CGCGgCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 58473 0.68 0.651732
Target:  5'- -cGAGU-UUUUGCGCUGUGUgGCCAAc -3'
miRNA:   3'- caCUCGcAAAGCGUGACGCGgCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 80283 0.68 0.651732
Target:  5'- cGUGAaCGgcUCGCACUugacgaGCGCCGUCGc -3'
miRNA:   3'- -CACUcGCaaAGCGUGA------CGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 12150 0.68 0.651732
Target:  5'- -cGAGCGcaaccagcgcUUUcggcugaagcCGCugUGCGCCGCCGc -3'
miRNA:   3'- caCUCGC----------AAA----------GCGugACGCGGCGGUu -5'
6958 3' -57.2 NC_001875.2 + 69230 0.69 0.641288
Target:  5'- -cGGGCGacgCGCGCUGUGCCGacuugcCCGAc -3'
miRNA:   3'- caCUCGCaaaGCGUGACGCGGC------GGUU- -5'
6958 3' -57.2 NC_001875.2 + 6935 0.69 0.641288
Target:  5'- cGUGAGCaacgcgUCGUGCgUGCGCCGCg-- -3'
miRNA:   3'- -CACUCGcaa---AGCGUG-ACGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 100264 0.69 0.630837
Target:  5'- uGUGGGCGg--CGCGCaaggaaGCCGCCGGg -3'
miRNA:   3'- -CACUCGCaaaGCGUGacg---CGGCGGUU- -5'
6958 3' -57.2 NC_001875.2 + 37104 0.69 0.630837
Target:  5'- cGUGGGUGUgcggGCGCgGCGCCGCg-- -3'
miRNA:   3'- -CACUCGCAaag-CGUGaCGCGGCGguu -5'
6958 3' -57.2 NC_001875.2 + 26302 0.69 0.620387
Target:  5'- cGUGGGCGUcacgccaauUUCGCgACgagccGUGUCGCCAAg -3'
miRNA:   3'- -CACUCGCA---------AAGCG-UGa----CGCGGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.