miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6958 5' -53.9 NC_001875.2 + 96368 0.66 0.926579
Target:  5'- -gCUGGCGCacauGCGCUgcaggucCUGCGCgucAAUGu -3'
miRNA:   3'- aaGACCGUG----CGCGA-------GACGCGau-UUAC- -5'
6958 5' -53.9 NC_001875.2 + 52855 0.66 0.921436
Target:  5'- -gCUGGUugACGCGCUucuacCUGCGCg----- -3'
miRNA:   3'- aaGACCG--UGCGCGA-----GACGCGauuuac -5'
6958 5' -53.9 NC_001875.2 + 5020 0.66 0.919675
Target:  5'- ---cGGCGCGCGCuuugucagauucagUCUGCGCc----- -3'
miRNA:   3'- aagaCCGUGCGCG--------------AGACGCGauuuac -5'
6958 5' -53.9 NC_001875.2 + 74119 0.66 0.915472
Target:  5'- -gCUGGCGCGUGUUCgccuagaGCUGGAg- -3'
miRNA:   3'- aaGACCGUGCGCGAGacg----CGAUUUac -5'
6958 5' -53.9 NC_001875.2 + 51205 0.66 0.893946
Target:  5'- gUUCUGGCgccgcccgucgagcGCGCGUUCcGCGCg----- -3'
miRNA:   3'- -AAGACCG--------------UGCGCGAGaCGCGauuuac -5'
6958 5' -53.9 NC_001875.2 + 67079 0.67 0.881779
Target:  5'- -gCUGGCGCGCGagaUCUacGCGCg----- -3'
miRNA:   3'- aaGACCGUGCGCg--AGA--CGCGauuuac -5'
6958 5' -53.9 NC_001875.2 + 35643 0.67 0.866563
Target:  5'- aUCUGGCGCaGCGCaagUGCGCg----- -3'
miRNA:   3'- aAGACCGUG-CGCGag-ACGCGauuuac -5'
6958 5' -53.9 NC_001875.2 + 30742 0.68 0.842017
Target:  5'- -aUUGGCACGUGCacgCUGuCGCUGu--- -3'
miRNA:   3'- aaGACCGUGCGCGa--GAC-GCGAUuuac -5'
6958 5' -53.9 NC_001875.2 + 77647 0.68 0.830782
Target:  5'- gUCUGGUgccgaacccgggcgACGCGUUUUGCGCcAGcgGg -3'
miRNA:   3'- aAGACCG--------------UGCGCGAGACGCGaUUuaC- -5'
6958 5' -53.9 NC_001875.2 + 44600 0.68 0.815586
Target:  5'- uUUUUGGCccagcGCGCGCUCgGgGCUGuguAUGa -3'
miRNA:   3'- -AAGACCG-----UGCGCGAGaCgCGAUu--UAC- -5'
6958 5' -53.9 NC_001875.2 + 30455 0.69 0.806396
Target:  5'- -gCUGGCGCGCGU--UGCGCg----- -3'
miRNA:   3'- aaGACCGUGCGCGagACGCGauuuac -5'
6958 5' -53.9 NC_001875.2 + 79310 0.7 0.717093
Target:  5'- -aCUGGCGCGUGCUUUcgaugagcgcgGCGCUGc--- -3'
miRNA:   3'- aaGACCGUGCGCGAGA-----------CGCGAUuuac -5'
6958 5' -53.9 NC_001875.2 + 66280 0.94 0.029668
Target:  5'- cUUCUGGCACGCGCUCUGCGUcAAAUGc -3'
miRNA:   3'- -AAGACCGUGCGCGAGACGCGaUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.