Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
696 | 3' | -57.9 | AC_000018.1 | + | 31258 | 0.66 | 0.414465 |
Target: 5'- aGCagugaaUGCAcCCCUUAGUaucuccacuuUGCUGAGUGa -3' miRNA: 3'- aCGg-----ACGUuGGGGGUCA----------ACGACUCGC- -5' |
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696 | 3' | -57.9 | AC_000018.1 | + | 27773 | 0.68 | 0.309106 |
Target: 5'- cGCCUGCAucgaaucuuCUCCCAGcgacccgUGCugauUGAGCGc -3' miRNA: 3'- aCGGACGUu--------GGGGGUCa------ACG----ACUCGC- -5' |
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696 | 3' | -57.9 | AC_000018.1 | + | 27017 | 0.67 | 0.367956 |
Target: 5'- cGCCUGCugccAACCCCauuuGggGCUGAuaGCu -3' miRNA: 3'- aCGGACG----UUGGGGgu--CaaCGACU--CGc -5' |
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696 | 3' | -57.9 | AC_000018.1 | + | 25609 | 1.09 | 0.000241 |
Target: 5'- uUGCCUGCAACCCCCAGUUGCUGAGCGa -3' miRNA: 3'- -ACGGACGUUGGGGGUCAACGACUCGC- -5' |
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696 | 3' | -57.9 | AC_000018.1 | + | 13932 | 0.71 | 0.180975 |
Target: 5'- cUGCUUGUAGCCCCCAauaucCUGGGCu -3' miRNA: 3'- -ACGGACGUUGGGGGUcaac-GACUCGc -5' |
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696 | 3' | -57.9 | AC_000018.1 | + | 10536 | 0.66 | 0.424192 |
Target: 5'- gGCCUGCAcaaaACCUCCAGgauacGgaG-GCGg -3' miRNA: 3'- aCGGACGU----UGGGGGUCaa---CgaCuCGC- -5' |
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696 | 3' | -57.9 | AC_000018.1 | + | 3826 | 0.67 | 0.367956 |
Target: 5'- cUGUCUaaGCAGgUggCCCAGUUGCgUGAGCa -3' miRNA: 3'- -ACGGA--CGUUgG--GGGUCAACG-ACUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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