miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6960 3' -55.7 NC_001875.2 + 38350 0.66 0.88542
Target:  5'- uGCUGUGUcgcUUGCGCcaaguguguUGCCacccGGCGcuGACa -3'
miRNA:   3'- gCGACAUA---AACGCG---------ACGGa---CCGC--CUG- -5'
6960 3' -55.7 NC_001875.2 + 39098 0.66 0.88542
Target:  5'- aCGCcaac---GCGCUGCugcaccgguuagCUGGCGGGCa -3'
miRNA:   3'- -GCGacauaaaCGCGACG------------GACCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 18622 0.66 0.88542
Target:  5'- gCGCUG-AUUccgGCGCUcaaacGCaugCUGGUGGGCa -3'
miRNA:   3'- -GCGACaUAAa--CGCGA-----CG---GACCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 126418 0.66 0.88542
Target:  5'- aCGUUGUcggGUUUGUGCUGaacaauGCGGACu -3'
miRNA:   3'- -GCGACA---UAAACGCGACggac--CGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 77077 0.66 0.88542
Target:  5'- gCGCcGUccuGUUUGCGCUGgCggugccGGCGGuGCg -3'
miRNA:   3'- -GCGaCA---UAAACGCGACgGa-----CCGCC-UG- -5'
6960 3' -55.7 NC_001875.2 + 37076 0.66 0.88542
Target:  5'- aCGCUGUGUUUGgcggacgacacCGCcGCgUGgguguGCGGGCg -3'
miRNA:   3'- -GCGACAUAAAC-----------GCGaCGgAC-----CGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 118225 0.66 0.87823
Target:  5'- aCGC---GUUUGCGUguugUGCCaaaacaauUGGCGGGCu -3'
miRNA:   3'- -GCGacaUAAACGCG----ACGG--------ACCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 36327 0.66 0.87823
Target:  5'- gCGCUGgggcugUUGCGCguguacgcgGCC-GGCGG-Cg -3'
miRNA:   3'- -GCGACaua---AACGCGa--------CGGaCCGCCuG- -5'
6960 3' -55.7 NC_001875.2 + 53999 0.66 0.863166
Target:  5'- aGCUGguc--GCGCacgGCCuUGGCGGcGCg -3'
miRNA:   3'- gCGACauaaaCGCGa--CGG-ACCGCC-UG- -5'
6960 3' -55.7 NC_001875.2 + 99754 0.66 0.855303
Target:  5'- aCGCUGUGUgcguuugGCGCcGUUguuGCGGGCu -3'
miRNA:   3'- -GCGACAUAaa-----CGCGaCGGac-CGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 131391 0.66 0.855303
Target:  5'- aGCagGUcaccGCGCUGCagaccacaUUGGCGGACa -3'
miRNA:   3'- gCGa-CAuaaaCGCGACG--------GACCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 18182 0.67 0.838948
Target:  5'- -aCUGUG---GCGgUGCC-GGCGGGCg -3'
miRNA:   3'- gcGACAUaaaCGCgACGGaCCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 58067 0.67 0.830471
Target:  5'- aCGCUGacc--GCGCUGUC-GGCGGuCu -3'
miRNA:   3'- -GCGACauaaaCGCGACGGaCCGCCuG- -5'
6960 3' -55.7 NC_001875.2 + 12435 0.67 0.830471
Target:  5'- cCGUUGcg--UGCGC-GCCgcGGUGGACg -3'
miRNA:   3'- -GCGACauaaACGCGaCGGa-CCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 89262 0.67 0.828753
Target:  5'- aGCUGacgcgcgcgUGCGCcGaCCUGGCGcGGCu -3'
miRNA:   3'- gCGACauaa-----ACGCGaC-GGACCGC-CUG- -5'
6960 3' -55.7 NC_001875.2 + 89501 0.67 0.812958
Target:  5'- cCGCUGcgacUGCGCUuccGCCUGGggccgcUGGGCg -3'
miRNA:   3'- -GCGACauaaACGCGA---CGGACC------GCCUG- -5'
6960 3' -55.7 NC_001875.2 + 46950 0.68 0.794757
Target:  5'- aCGCcaaggUUGUGCUGCUgcagGGCGaGACg -3'
miRNA:   3'- -GCGacauaAACGCGACGGa---CCGC-CUG- -5'
6960 3' -55.7 NC_001875.2 + 35382 0.68 0.785421
Target:  5'- aGCUGgag--GCGCUGCUguccgUGGCGcGCg -3'
miRNA:   3'- gCGACauaaaCGCGACGG-----ACCGCcUG- -5'
6960 3' -55.7 NC_001875.2 + 90434 0.68 0.766324
Target:  5'- aCGCUGUAgacGCGCgcgcagagGCgUcGGUGGGCg -3'
miRNA:   3'- -GCGACAUaaaCGCGa-------CGgA-CCGCCUG- -5'
6960 3' -55.7 NC_001875.2 + 84362 0.68 0.746727
Target:  5'- gCGCcgGUAggUGCGCgGCCUGcCGGGg -3'
miRNA:   3'- -GCGa-CAUaaACGCGaCGGACcGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.