miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6960 5' -57.4 NC_001875.2 + 98743 0.66 0.846889
Target:  5'- uGGUGCGUGcucaGCCgCGACGGCg-- -3'
miRNA:   3'- gCCACGCGCuca-CGGgGCUGUUGaug -5'
6960 5' -57.4 NC_001875.2 + 123049 0.66 0.837988
Target:  5'- aGGUGaaaaGCGAGUGCCaaaugagcgccaaCCGGuuuucgGACUACa -3'
miRNA:   3'- gCCACg---CGCUCACGG-------------GGCUg-----UUGAUG- -5'
6960 5' -57.4 NC_001875.2 + 15007 0.66 0.830537
Target:  5'- uGcGUGCuGUGAcUGUgCCGACAACUAUc -3'
miRNA:   3'- gC-CACG-CGCUcACGgGGCUGUUGAUG- -5'
6960 5' -57.4 NC_001875.2 + 58290 0.66 0.830537
Target:  5'- -aGUGCGCGAGcugcaaGCCCUG-CAAUUAa -3'
miRNA:   3'- gcCACGCGCUCa-----CGGGGCuGUUGAUg -5'
6960 5' -57.4 NC_001875.2 + 103024 0.66 0.822088
Target:  5'- gCGG-GCGUGAccacGUGCCCCGuuuGCcGCg -3'
miRNA:   3'- -GCCaCGCGCU----CACGGGGCuguUGaUG- -5'
6960 5' -57.4 NC_001875.2 + 111752 0.66 0.813466
Target:  5'- uGGgGCGCccaucacGUGCgCCGACGACUGg -3'
miRNA:   3'- gCCaCGCGcu-----CACGgGGCUGUUGAUg -5'
6960 5' -57.4 NC_001875.2 + 128012 0.66 0.813466
Target:  5'- gCGGccGCGcCGGcGUGCgCCGACGACgGCc -3'
miRNA:   3'- -GCCa-CGC-GCU-CACGgGGCUGUUGaUG- -5'
6960 5' -57.4 NC_001875.2 + 89553 0.66 0.813466
Target:  5'- uGGcGcCGCGGGUGCCCaguguUGGCGAgaGCg -3'
miRNA:   3'- gCCaC-GCGCUCACGGG-----GCUGUUgaUG- -5'
6960 5' -57.4 NC_001875.2 + 128666 0.67 0.795737
Target:  5'- uGGUGCGCG---GCCgCCGGCucacCUACu -3'
miRNA:   3'- gCCACGCGCucaCGG-GGCUGuu--GAUG- -5'
6960 5' -57.4 NC_001875.2 + 62572 0.67 0.795737
Target:  5'- uCGGUGUGCGuGUGCauuaaCCGGCccgUGCc -3'
miRNA:   3'- -GCCACGCGCuCACGg----GGCUGuugAUG- -5'
6960 5' -57.4 NC_001875.2 + 26281 0.67 0.795737
Target:  5'- ---cGCGCcuuGAGUGCgacgacgacaCCGACGACUGCa -3'
miRNA:   3'- gccaCGCG---CUCACGg---------GGCUGUUGAUG- -5'
6960 5' -57.4 NC_001875.2 + 29262 0.67 0.786648
Target:  5'- gGGUGCGCG---GCCgCCGACcGCgccgGCg -3'
miRNA:   3'- gCCACGCGCucaCGG-GGCUGuUGa---UG- -5'
6960 5' -57.4 NC_001875.2 + 26167 0.67 0.786648
Target:  5'- gCGGUGUGUGGGUGgC-CGGCAaggaGCUGg -3'
miRNA:   3'- -GCCACGCGCUCACgGgGCUGU----UGAUg -5'
6960 5' -57.4 NC_001875.2 + 121436 0.67 0.777419
Target:  5'- -aGUGCaGCGGGUGCCgCGccACGGCgcgGCg -3'
miRNA:   3'- gcCACG-CGCUCACGGgGC--UGUUGa--UG- -5'
6960 5' -57.4 NC_001875.2 + 73685 0.67 0.777419
Target:  5'- gCGGcugcUGCgGCGGcUGCUgCGGCGGCUGCg -3'
miRNA:   3'- -GCC----ACG-CGCUcACGGgGCUGUUGAUG- -5'
6960 5' -57.4 NC_001875.2 + 6995 0.67 0.768061
Target:  5'- cCGGUGUGgGuGUGCUgcuggCCGGCGGCg-- -3'
miRNA:   3'- -GCCACGCgCuCACGG-----GGCUGUUGaug -5'
6960 5' -57.4 NC_001875.2 + 65799 0.67 0.762388
Target:  5'- uCGGcGCGCG-GUGCCUgCGcggcgccaagcgcuuGCAGCUGCu -3'
miRNA:   3'- -GCCaCGCGCuCACGGG-GC---------------UGUUGAUG- -5'
6960 5' -57.4 NC_001875.2 + 31218 0.67 0.758582
Target:  5'- uGG-GCGCGAGUGUCgCGcCAGCc-- -3'
miRNA:   3'- gCCaCGCGCUCACGGgGCuGUUGaug -5'
6960 5' -57.4 NC_001875.2 + 119067 0.67 0.748992
Target:  5'- -uGUGCGCG-GcGCCCCGGCugGACaACa -3'
miRNA:   3'- gcCACGCGCuCaCGGGGCUG--UUGaUG- -5'
6960 5' -57.4 NC_001875.2 + 18881 0.67 0.748992
Target:  5'- ---cGCGCGAGUuUCCCGACGAUUugucGCg -3'
miRNA:   3'- gccaCGCGCUCAcGGGGCUGUUGA----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.