Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6961 | 3' | -51.4 | NC_001875.2 | + | 62688 | 0.66 | 0.977109 |
Target: 5'- cUugGUUGuGUGCGCAGaaugcucgCCACGUu -3' miRNA: 3'- aAugCAACcCGCGCGUUaaa-----GGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 46449 | 0.66 | 0.976855 |
Target: 5'- gUUACGgu-GGCGCGCAaaucgcaaacggcGUUUgCCAaCGCg -3' miRNA: 3'- -AAUGCaacCCGCGCGU-------------UAAA-GGU-GCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 91156 | 0.66 | 0.97608 |
Target: 5'- -cGCGaUUGacGGuCGCGCAAUUggacggaaugucgCCGCGCa -3' miRNA: 3'- aaUGC-AAC--CC-GCGCGUUAAa------------GGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 20921 | 0.66 | 0.974475 |
Target: 5'- --uCGUgUGGGCGCGCcAUggCCA-GCu -3' miRNA: 3'- aauGCA-ACCCGCGCGuUAaaGGUgCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 43320 | 0.66 | 0.974475 |
Target: 5'- -cGCGcgcGGGUcgGCGUggUUgccgCCGCGCa -3' miRNA: 3'- aaUGCaa-CCCG--CGCGuuAAa---GGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 40604 | 0.66 | 0.974475 |
Target: 5'- cUACGgcgccguggUGGGCGC-CA----CCACGCg -3' miRNA: 3'- aAUGCa--------ACCCGCGcGUuaaaGGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 44462 | 0.66 | 0.9742 |
Target: 5'- -cACGUUGucguuGGCGCGCugcgggucuugAGUUUCCgacauugggcuuuGCGCg -3' miRNA: 3'- aaUGCAAC-----CCGCGCG-----------UUAAAGG-------------UGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 71896 | 0.66 | 0.973923 |
Target: 5'- -gGCGUucuuguccgcccacUGGGCGUGCGcgUcggcgagcgccuugaCCGCGCg -3' miRNA: 3'- aaUGCA--------------ACCCGCGCGUuaAa--------------GGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 123022 | 0.66 | 0.973644 |
Target: 5'- --gUGUUGGGCGCGCcgccugcccaacccGAUUcUCUggGCa -3' miRNA: 3'- aauGCAACCCGCGCG--------------UUAA-AGGugCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 11033 | 0.67 | 0.971628 |
Target: 5'- -cAUGaUGGGCGaC-CAGUUUcaCCACGCg -3' miRNA: 3'- aaUGCaACCCGC-GcGUUAAA--GGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 37051 | 0.67 | 0.96856 |
Target: 5'- -cGCGUgcacGCGCGCGGacgcggCCACGCu -3' miRNA: 3'- aaUGCAacc-CGCGCGUUaaa---GGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 127890 | 0.67 | 0.96856 |
Target: 5'- -aACGguuugUGGGCGCGCAuUUgaaCAaGCg -3' miRNA: 3'- aaUGCa----ACCCGCGCGUuAAag-GUgCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 38777 | 0.67 | 0.96856 |
Target: 5'- --cUGUUGGGCGgagagcgcgccCGCAA-UUCgGCGCu -3' miRNA: 3'- aauGCAACCCGC-----------GCGUUaAAGgUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 79129 | 0.67 | 0.96856 |
Target: 5'- -gGCGgcGGGCGCcGCGgcgggcucGUUUgCCACGg -3' miRNA: 3'- aaUGCaaCCCGCG-CGU--------UAAA-GGUGCg -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 54985 | 0.67 | 0.968241 |
Target: 5'- -cGCGcUGGGCGCcuuucguuucgugGCGAUUUugaCCAgCGCg -3' miRNA: 3'- aaUGCaACCCGCG-------------CGUUAAA---GGU-GCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 99307 | 0.67 | 0.96661 |
Target: 5'- -gGCGUUguauacGGGCuGCGCAgcaacGUUgcgcgaagcgucgugUCCGCGCa -3' miRNA: 3'- aaUGCAA------CCCG-CGCGU-----UAA---------------AGGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 86169 | 0.67 | 0.965263 |
Target: 5'- -gACGU--GGUGCGgGAUUUUgACGCg -3' miRNA: 3'- aaUGCAacCCGCGCgUUAAAGgUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 21069 | 0.67 | 0.965263 |
Target: 5'- -gGCGUuuUGGGCaaaagacgcgcgGCgGCGGUcgCCGCGCu -3' miRNA: 3'- aaUGCA--ACCCG------------CG-CGUUAaaGGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 103224 | 0.67 | 0.965263 |
Target: 5'- ---aGUUGGGCaCGUAAgccCCGCGUa -3' miRNA: 3'- aaugCAACCCGcGCGUUaaaGGUGCG- -5' |
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6961 | 3' | -51.4 | NC_001875.2 | + | 36056 | 0.67 | 0.965263 |
Target: 5'- -cGCGUUGcGGUuuGCGCAAcggUUCCugcaacaagACGCg -3' miRNA: 3'- aaUGCAAC-CCG--CGCGUUa--AAGG---------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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