miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 5' -62 NC_001875.2 + 65754 0.66 0.591466
Target:  5'- gGGCcUCGGCGUauucgUGCGCGgCGGgCGg -3'
miRNA:   3'- aCUGcGGCCGCAa----ACGCGCgGCCgGU- -5'
6961 5' -62 NC_001875.2 + 71894 0.66 0.585535
Target:  5'- uUGGCGUUcuuguccgcccacugGGCGU--GCGCGUCGGCgAg -3'
miRNA:   3'- -ACUGCGG---------------CCGCAaaCGCGCGGCCGgU- -5'
6961 5' -62 NC_001875.2 + 69354 0.66 0.581587
Target:  5'- -cGCGCagucagCGGCGUgcgcccgcUGCGCGCCGuCCAc -3'
miRNA:   3'- acUGCG------GCCGCAa-------ACGCGCGGCcGGU- -5'
6961 5' -62 NC_001875.2 + 114352 0.66 0.581587
Target:  5'- cGACG-CGGCGUccGCcaacuUGCUGGCCAu -3'
miRNA:   3'- aCUGCgGCCGCAaaCGc----GCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 129166 0.66 0.581587
Target:  5'- aGGCGCC-GCaGUUgccccagGCGcCGCCGGCg- -3'
miRNA:   3'- aCUGCGGcCG-CAAa------CGC-GCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 42748 0.66 0.581587
Target:  5'- cGACGCgcaUGGUGagcgGCGCGCucggguCGGCCGu -3'
miRNA:   3'- aCUGCG---GCCGCaaa-CGCGCG------GCCGGU- -5'
6961 5' -62 NC_001875.2 + 91200 0.66 0.581587
Target:  5'- ---aGCCGGCGcgUGCGCGCCcaguugaGCUu -3'
miRNA:   3'- acugCGGCCGCaaACGCGCGGc------CGGu -5'
6961 5' -62 NC_001875.2 + 6485 0.66 0.581587
Target:  5'- cGGCGCCcaacGCGgagUGcCGCGCCaacacgcuGGCCGc -3'
miRNA:   3'- aCUGCGGc---CGCaa-AC-GCGCGG--------CCGGU- -5'
6961 5' -62 NC_001875.2 + 21059 0.66 0.580601
Target:  5'- cGugGUCGGCGgcgUUuugggcaaaagacGCGCGgCGGCg- -3'
miRNA:   3'- aCugCGGCCGCa--AA-------------CGCGCgGCCGgu -5'
6961 5' -62 NC_001875.2 + 96227 0.66 0.571743
Target:  5'- -cGCGUCGGCGUUggGCGCGUucagggaacgcaUGGCg- -3'
miRNA:   3'- acUGCGGCCGCAAa-CGCGCG------------GCCGgu -5'
6961 5' -62 NC_001875.2 + 47672 0.66 0.571743
Target:  5'- gGACG-CGGCcgcgGCGCGCCGcGCg- -3'
miRNA:   3'- aCUGCgGCCGcaaaCGCGCGGC-CGgu -5'
6961 5' -62 NC_001875.2 + 3075 0.66 0.571743
Target:  5'- -cGCGCCGGgGUcgcccacgGCGUGCaCGcGCCGg -3'
miRNA:   3'- acUGCGGCCgCAaa------CGCGCG-GC-CGGU- -5'
6961 5' -62 NC_001875.2 + 7132 0.66 0.571743
Target:  5'- -cGCGCCGcuuGCcag-GCGCGuuGGCCGa -3'
miRNA:   3'- acUGCGGC---CGcaaaCGCGCggCCGGU- -5'
6961 5' -62 NC_001875.2 + 102616 0.66 0.571743
Target:  5'- gGAaGCCGcGCGUUUGCGCaCCuuugcggaguGGCCc -3'
miRNA:   3'- aCUgCGGC-CGCAAACGCGcGG----------CCGGu -5'
6961 5' -62 NC_001875.2 + 105899 0.66 0.571743
Target:  5'- --cCGauGGCGg--GCGCGgCGGCCAc -3'
miRNA:   3'- acuGCggCCGCaaaCGCGCgGCCGGU- -5'
6961 5' -62 NC_001875.2 + 8499 0.67 0.561939
Target:  5'- gGGCGCCGucCGUgUGgGCGCCGcGCa- -3'
miRNA:   3'- aCUGCGGCc-GCAaACgCGCGGC-CGgu -5'
6961 5' -62 NC_001875.2 + 41603 0.67 0.561939
Target:  5'- aGGCGCgGGCGc--GgGCGCgGGCa- -3'
miRNA:   3'- aCUGCGgCCGCaaaCgCGCGgCCGgu -5'
6961 5' -62 NC_001875.2 + 80513 0.67 0.561939
Target:  5'- cGACaCCauGGCGcgUGCGaGCUGGCCGa -3'
miRNA:   3'- aCUGcGG--CCGCaaACGCgCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 56452 0.67 0.561939
Target:  5'- gUGAgGCCGGUGgcgggguccGCGCGCguguUGGUCAg -3'
miRNA:   3'- -ACUgCGGCCGCaaa------CGCGCG----GCCGGU- -5'
6961 5' -62 NC_001875.2 + 65487 0.67 0.561939
Target:  5'- cGACGCCGacUGgaUGCGCGCCuuCCAg -3'
miRNA:   3'- aCUGCGGCc-GCaaACGCGCGGccGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.