miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6962 5' -56.3 NC_001875.2 + 90240 0.66 0.849273
Target:  5'- uGCCcGCGCCcgcGCCCGCgccUUCGGcgucuuuguuGGACa -3'
miRNA:   3'- -CGGuCGCGGc--UGGGCGa--AAGCU----------CUUG- -5'
6962 5' -56.3 NC_001875.2 + 20898 0.66 0.849273
Target:  5'- -gCAGCGCCaGCCCGUcgcauugUUCGuguGGGCg -3'
miRNA:   3'- cgGUCGCGGcUGGGCGa------AAGCu--CUUG- -5'
6962 5' -56.3 NC_001875.2 + 45757 0.66 0.849273
Target:  5'- -gCGGCGCCGAgCCCGacacCGAGGu- -3'
miRNA:   3'- cgGUCGCGGCU-GGGCgaaaGCUCUug -5'
6962 5' -56.3 NC_001875.2 + 104785 0.67 0.841191
Target:  5'- aCCAGCGCUGGCauccuuccaGCUUUCGuGGuaGCu -3'
miRNA:   3'- cGGUCGCGGCUGgg-------CGAAAGCuCU--UG- -5'
6962 5' -56.3 NC_001875.2 + 114917 0.67 0.841191
Target:  5'- cGCCGauGCGCUcaaacacgaGGCCCGCgccgucgUCGAuGGGCg -3'
miRNA:   3'- -CGGU--CGCGG---------CUGGGCGaa-----AGCU-CUUG- -5'
6962 5' -56.3 NC_001875.2 + 113609 0.67 0.841191
Target:  5'- aGUCGGCGgCGGgCCGCgg-CGgcaAGAGCg -3'
miRNA:   3'- -CGGUCGCgGCUgGGCGaaaGC---UCUUG- -5'
6962 5' -56.3 NC_001875.2 + 122753 0.67 0.841191
Target:  5'- gGUUAGCGCCGACUCGCcacaggCGcAGuuGGCg -3'
miRNA:   3'- -CGGUCGCGGCUGGGCGaaa---GC-UC--UUG- -5'
6962 5' -56.3 NC_001875.2 + 4535 0.67 0.832917
Target:  5'- cGCCGGCuGCgGuuCCUGCggUUUGGGGGCc -3'
miRNA:   3'- -CGGUCG-CGgCu-GGGCGa-AAGCUCUUG- -5'
6962 5' -56.3 NC_001875.2 + 31714 0.67 0.827863
Target:  5'- cGCCGGCGCauUacuuucggcgaaguuGGCCCGCggcgUUUGAGcGCg -3'
miRNA:   3'- -CGGUCGCG--G---------------CUGGGCGa---AAGCUCuUG- -5'
6962 5' -56.3 NC_001875.2 + 60922 0.67 0.827863
Target:  5'- gGCCGGCGCUGACgcaCCGCUaaaaauagcacucgcUUUaccAGAACg -3'
miRNA:   3'- -CGGUCGCGGCUG---GGCGA---------------AAGc--UCUUG- -5'
6962 5' -56.3 NC_001875.2 + 12011 0.67 0.824458
Target:  5'- gGCgAGCG-CGGCCaacaaaCGCUUugaaaUCGAGGACg -3'
miRNA:   3'- -CGgUCGCgGCUGG------GCGAA-----AGCUCUUG- -5'
6962 5' -56.3 NC_001875.2 + 59936 0.67 0.824458
Target:  5'- aUCAGUGCCGugUCGCggcuggUCGAcGAGu -3'
miRNA:   3'- cGGUCGCGGCugGGCGaa----AGCU-CUUg -5'
6962 5' -56.3 NC_001875.2 + 127323 0.67 0.824458
Target:  5'- aGCCGGCGgUG-CgCCGCUUUCcgcagcGGAGCa -3'
miRNA:   3'- -CGGUCGCgGCuG-GGCGAAAGc-----UCUUG- -5'
6962 5' -56.3 NC_001875.2 + 46496 0.67 0.821024
Target:  5'- cGCCacGGCGUCGGCguUCGCggcgggcggggCGAGAGCg -3'
miRNA:   3'- -CGG--UCGCGGCUG--GGCGaaa--------GCUCUUG- -5'
6962 5' -56.3 NC_001875.2 + 30742 0.67 0.815822
Target:  5'- cGUCAGCGgCGAcCCCGCUUUUauaGGCg -3'
miRNA:   3'- -CGGUCGCgGCU-GGGCGAAAGcucUUG- -5'
6962 5' -56.3 NC_001875.2 + 61052 0.67 0.810559
Target:  5'- aGCCGGCGCUGACgcaCCGCUaaaaauagcacucgcUUUaccAGAACg -3'
miRNA:   3'- -CGGUCGCGGCUG---GGCGA---------------AAGc--UCUUG- -5'
6962 5' -56.3 NC_001875.2 + 14691 0.67 0.807017
Target:  5'- uGCgAGCG-CGACCUGCg--CGAGcACu -3'
miRNA:   3'- -CGgUCGCgGCUGGGCGaaaGCUCuUG- -5'
6962 5' -56.3 NC_001875.2 + 76954 0.67 0.807017
Target:  5'- aCUGGCGgaCGAgUCCGCgUUCGGGAGCa -3'
miRNA:   3'- cGGUCGCg-GCU-GGGCGaAAGCUCUUG- -5'
6962 5' -56.3 NC_001875.2 + 29265 0.67 0.807017
Target:  5'- uGCgCGGcCGCCGACCgCGCcggCGGGGcGCg -3'
miRNA:   3'- -CG-GUC-GCGGCUGG-GCGaaaGCUCU-UG- -5'
6962 5' -56.3 NC_001875.2 + 114744 0.67 0.807017
Target:  5'- cGUCAGCGaCGACCgUGCuUUUCGGgucGAACg -3'
miRNA:   3'- -CGGUCGCgGCUGG-GCG-AAAGCU---CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.