miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6963 3' -60.4 NC_001875.2 + 43542 0.66 0.697815
Target:  5'- gACCGCggUGCGGacaaucacCGCGUCGCCcGcCAGc- -3'
miRNA:   3'- -UGGCG--ACGCU--------GCGCAGCGGaC-GUCac -5'
6963 3' -60.4 NC_001875.2 + 111035 0.66 0.697815
Target:  5'- -gCGCUGCGACGaCGcccgCGCaCUGCGcGUc -3'
miRNA:   3'- ugGCGACGCUGC-GCa---GCG-GACGU-CAc -5'
6963 3' -60.4 NC_001875.2 + 118698 0.66 0.697815
Target:  5'- uACCGC-GUGGuCGUGUCGCCgcUGCAa-- -3'
miRNA:   3'- -UGGCGaCGCU-GCGCAGCGG--ACGUcac -5'
6963 3' -60.4 NC_001875.2 + 17640 0.66 0.697815
Target:  5'- uACCGCccaacuUGCGcaauCGCG-CGCUgGCGGUGa -3'
miRNA:   3'- -UGGCG------ACGCu---GCGCaGCGGaCGUCAC- -5'
6963 3' -60.4 NC_001875.2 + 49979 0.66 0.696824
Target:  5'- cGCUGCUGCuguagcuGACGCGgCGCUUgucGCGGUu -3'
miRNA:   3'- -UGGCGACG-------CUGCGCaGCGGA---CGUCAc -5'
6963 3' -60.4 NC_001875.2 + 72559 0.66 0.687885
Target:  5'- -gCGCUGCgGGCGCGggCGCgggcgCUGCGGg- -3'
miRNA:   3'- ugGCGACG-CUGCGCa-GCG-----GACGUCac -5'
6963 3' -60.4 NC_001875.2 + 48522 0.66 0.687885
Target:  5'- cGCCGCc-CGGCGCG-CGCCccGCGGg- -3'
miRNA:   3'- -UGGCGacGCUGCGCaGCGGa-CGUCac -5'
6963 3' -60.4 NC_001875.2 + 111486 0.66 0.677909
Target:  5'- aGCUGCUG-GACGCGgagCGgCUGguGa- -3'
miRNA:   3'- -UGGCGACgCUGCGCa--GCgGACguCac -5'
6963 3' -60.4 NC_001875.2 + 72134 0.66 0.657858
Target:  5'- aGCCGCUGCu-CGC-UCGCCagcccaaacUGCAGa- -3'
miRNA:   3'- -UGGCGACGcuGCGcAGCGG---------ACGUCac -5'
6963 3' -60.4 NC_001875.2 + 112839 0.66 0.657858
Target:  5'- aGCgCGUUGCGGCcuGCG-CGCaCUGCcGUGg -3'
miRNA:   3'- -UG-GCGACGCUG--CGCaGCG-GACGuCAC- -5'
6963 3' -60.4 NC_001875.2 + 24383 0.66 0.657858
Target:  5'- cGCCGUUGCuGACGCaUCGCCaaugaUGuCGGUu -3'
miRNA:   3'- -UGGCGACG-CUGCGcAGCGG-----AC-GUCAc -5'
6963 3' -60.4 NC_001875.2 + 73457 0.66 0.647799
Target:  5'- cGCUGUUGaCGACGCG-CGUUUGCAa-- -3'
miRNA:   3'- -UGGCGAC-GCUGCGCaGCGGACGUcac -5'
6963 3' -60.4 NC_001875.2 + 90896 0.67 0.637727
Target:  5'- gGCCGCgucggGCauguuGACGgGcacgcaGCCUGCGGUGg -3'
miRNA:   3'- -UGGCGa----CG-----CUGCgCag----CGGACGUCAC- -5'
6963 3' -60.4 NC_001875.2 + 71722 0.67 0.637727
Target:  5'- gACCGCUGCGGCaGCGUaaacgagcgacaCGUCUacgaGGUGg -3'
miRNA:   3'- -UGGCGACGCUG-CGCA------------GCGGAcg--UCAC- -5'
6963 3' -60.4 NC_001875.2 + 95031 0.67 0.637727
Target:  5'- aACUGCcGCGGCGCGUaacgCGCaccgUGCAGa- -3'
miRNA:   3'- -UGGCGaCGCUGCGCA----GCGg---ACGUCac -5'
6963 3' -60.4 NC_001875.2 + 10998 0.67 0.637727
Target:  5'- -gCGCUGCaGGCGCGcgUGCCcaUGguGUGc -3'
miRNA:   3'- ugGCGACG-CUGCGCa-GCGG--ACguCAC- -5'
6963 3' -60.4 NC_001875.2 + 86103 0.67 0.635712
Target:  5'- cGCCGCguuuacggcuucGCGugGaCGUgGCCaucgGCAGUGc -3'
miRNA:   3'- -UGGCGa-----------CGCugC-GCAgCGGa---CGUCAC- -5'
6963 3' -60.4 NC_001875.2 + 3143 0.67 0.627651
Target:  5'- cCCGCUGCgcgGACGCGgCGUCggGCGGc- -3'
miRNA:   3'- uGGCGACG---CUGCGCaGCGGa-CGUCac -5'
6963 3' -60.4 NC_001875.2 + 116176 0.67 0.627651
Target:  5'- cGCCGUgugucgaaUGUGugGCGUgCGUCUGCaccgccucagGGUGg -3'
miRNA:   3'- -UGGCG--------ACGCugCGCA-GCGGACG----------UCAC- -5'
6963 3' -60.4 NC_001875.2 + 74948 0.67 0.627651
Target:  5'- cGCUGCUGCGGCG-GUaCGaCCUGCcGg- -3'
miRNA:   3'- -UGGCGACGCUGCgCA-GC-GGACGuCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.