miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6963 5' -52 NC_001875.2 + 94838 0.65 0.96976
Target:  5'- gUGCGCUGCAucauugcGGCGAUAucggccacguacgcCAGGCGcGUUu -3'
miRNA:   3'- -ACGCGGCGUu------UCGUUAU--------------GUUCGC-CAA- -5'
6963 5' -52 NC_001875.2 + 38274 0.66 0.967512
Target:  5'- aGCGCCucGCAgcGCGcGUACGAcgacGCGGUg -3'
miRNA:   3'- aCGCGG--CGUuuCGU-UAUGUU----CGCCAa -5'
6963 5' -52 NC_001875.2 + 11114 0.66 0.967512
Target:  5'- gGCGCCGCAGcuGCAAUugGCAAuucGCGa-- -3'
miRNA:   3'- aCGCGGCGUUu-CGUUA--UGUU---CGCcaa -5'
6963 5' -52 NC_001875.2 + 23177 0.66 0.967512
Target:  5'- gGCgGCUGC-GGGCAcgGCcguuGGCGGUUg -3'
miRNA:   3'- aCG-CGGCGuUUCGUuaUGu---UCGCCAA- -5'
6963 5' -52 NC_001875.2 + 105564 0.66 0.967512
Target:  5'- cGuCGUCGCAcucaAGGCGcguGUACAucuuGGCGGUg -3'
miRNA:   3'- aC-GCGGCGU----UUCGU---UAUGU----UCGCCAa -5'
6963 5' -52 NC_001875.2 + 92777 0.66 0.967512
Target:  5'- cGCGgCGCAcaauGGCcAUGCGcuuGCGGUa -3'
miRNA:   3'- aCGCgGCGUu---UCGuUAUGUu--CGCCAa -5'
6963 5' -52 NC_001875.2 + 124714 0.66 0.967512
Target:  5'- cGCGCCugGC-AAGCGGcGCGuGGCGGUc -3'
miRNA:   3'- aCGCGG--CGuUUCGUUaUGU-UCGCCAa -5'
6963 5' -52 NC_001875.2 + 51816 0.66 0.9641
Target:  5'- --aGCUGCAAAGCAAaaacgGCuacGCGGUg -3'
miRNA:   3'- acgCGGCGUUUCGUUa----UGuu-CGCCAa -5'
6963 5' -52 NC_001875.2 + 6444 0.66 0.9641
Target:  5'- cGCGCCGUcguAGUA--GCGcGCGGUg -3'
miRNA:   3'- aCGCGGCGuu-UCGUuaUGUuCGCCAa -5'
6963 5' -52 NC_001875.2 + 32799 0.66 0.9641
Target:  5'- gGCGCCGCGccGGCAAgcucgGCGAaCGGc- -3'
miRNA:   3'- aCGCGGCGUu-UCGUUa----UGUUcGCCaa -5'
6963 5' -52 NC_001875.2 + 114995 0.66 0.9641
Target:  5'- gUGCGcCCGCGuAGCGA-AUcGGCGGg- -3'
miRNA:   3'- -ACGC-GGCGUuUCGUUaUGuUCGCCaa -5'
6963 5' -52 NC_001875.2 + 99601 0.66 0.9641
Target:  5'- cGCGCCGguAugucugcgcguuGGCGuucUGCAAGUGGc- -3'
miRNA:   3'- aCGCGGCguU------------UCGUu--AUGUUCGCCaa -5'
6963 5' -52 NC_001875.2 + 21902 0.66 0.9641
Target:  5'- cGCGCUGCuccgcgguGAGCGgcgcGUGCAuggcuaAGCGGg- -3'
miRNA:   3'- aCGCGGCGu-------UUCGU----UAUGU------UCGCCaa -5'
6963 5' -52 NC_001875.2 + 70023 0.66 0.9641
Target:  5'- gUGCGCCGUguuGGCAuugAUuguGCGGUc -3'
miRNA:   3'- -ACGCGGCGuu-UCGUua-UGuu-CGCCAa -5'
6963 5' -52 NC_001875.2 + 85230 0.66 0.9641
Target:  5'- aGCGCCGCAu-GUcg-ACGAGCGcGg- -3'
miRNA:   3'- aCGCGGCGUuuCGuuaUGUUCGC-Caa -5'
6963 5' -52 NC_001875.2 + 105605 0.66 0.960444
Target:  5'- -aCGCCGCAgcGCcaa--GAGCGGUUg -3'
miRNA:   3'- acGCGGCGUuuCGuuaugUUCGCCAA- -5'
6963 5' -52 NC_001875.2 + 38792 0.66 0.960444
Target:  5'- cGCGcCCGCAAuucGGCGcUGCAAuugcucGUGGUUg -3'
miRNA:   3'- aCGC-GGCGUU---UCGUuAUGUU------CGCCAA- -5'
6963 5' -52 NC_001875.2 + 38310 0.66 0.960444
Target:  5'- aGCGCCGaCAAGGCcggcggcAUGCAAgacgugcuGUGGUUg -3'
miRNA:   3'- aCGCGGC-GUUUCGu------UAUGUU--------CGCCAA- -5'
6963 5' -52 NC_001875.2 + 61512 0.66 0.960444
Target:  5'- gGCGCCGCAGuccGC-GUGCucgcgcuuGGCGGc- -3'
miRNA:   3'- aCGCGGCGUUu--CGuUAUGu-------UCGCCaa -5'
6963 5' -52 NC_001875.2 + 104484 0.66 0.960444
Target:  5'- cGUGCUGguGAGCcgcauGAUGCGAGcCGGc- -3'
miRNA:   3'- aCGCGGCguUUCG-----UUAUGUUC-GCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.