miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6964 3' -50.6 NC_001875.2 + 131510 0.66 0.99456
Target:  5'- ---cUGCGGCGCgcgguGCAGCGgcuggaagcgGCGCAa -3'
miRNA:   3'- ggacAUGCUGCGau---UGUUGCa---------CGCGU- -5'
6964 3' -50.6 NC_001875.2 + 60303 0.66 0.99456
Target:  5'- aCUGcagGCGACGCgucGCAGCGguucuugggGcCGCAg -3'
miRNA:   3'- gGACa--UGCUGCGau-UGUUGCa--------C-GCGU- -5'
6964 3' -50.6 NC_001875.2 + 32399 0.66 0.99456
Target:  5'- ----gGCGACGCaaaaguugugGGCGACG-GCGCAa -3'
miRNA:   3'- ggacaUGCUGCGa---------UUGUUGCaCGCGU- -5'
6964 3' -50.6 NC_001875.2 + 104706 0.66 0.99456
Target:  5'- gCUGgACGA-GCUAaacagggcugugGCAAUGUGCGUg -3'
miRNA:   3'- gGACaUGCUgCGAU------------UGUUGCACGCGu -5'
6964 3' -50.6 NC_001875.2 + 9609 0.66 0.99456
Target:  5'- --cGUgcaACGACGCguuuguGCuaagcuGCGUGCGCGc -3'
miRNA:   3'- ggaCA---UGCUGCGau----UGu-----UGCACGCGU- -5'
6964 3' -50.6 NC_001875.2 + 113569 0.66 0.99456
Target:  5'- cCUUGUGCGAcCGCguguCGACGguaaacaagaGCGCGu -3'
miRNA:   3'- -GGACAUGCU-GCGauu-GUUGCa---------CGCGU- -5'
6964 3' -50.6 NC_001875.2 + 128303 0.66 0.99456
Target:  5'- ----cACGGCGCcGGUGACGUGCGCc -3'
miRNA:   3'- ggacaUGCUGCGaUUGUUGCACGCGu -5'
6964 3' -50.6 NC_001875.2 + 12411 0.66 0.994477
Target:  5'- gCUGUuuGCcGCGCgccaAGCAggccguuGCGUGCGCGc -3'
miRNA:   3'- gGACA--UGcUGCGa---UUGU-------UGCACGCGU- -5'
6964 3' -50.6 NC_001875.2 + 88430 0.66 0.994049
Target:  5'- --aGUACGccgGCGUUAACGAgcgcauggaaaagauUGUGCGCGu -3'
miRNA:   3'- ggaCAUGC---UGCGAUUGUU---------------GCACGCGU- -5'
6964 3' -50.6 NC_001875.2 + 42759 0.66 0.993687
Target:  5'- -gUGaGCGGCGCgcucggguCGGcCGUGCGCAc -3'
miRNA:   3'- ggACaUGCUGCGauu-----GUU-GCACGCGU- -5'
6964 3' -50.6 NC_001875.2 + 85822 0.66 0.993687
Target:  5'- ----cGCGGCGCcAGCuGCGUGgGCGg -3'
miRNA:   3'- ggacaUGCUGCGaUUGuUGCACgCGU- -5'
6964 3' -50.6 NC_001875.2 + 120656 0.66 0.993687
Target:  5'- uCCUGUucacugaaaacgACGGCGCgcuGC--UGUGCGCc -3'
miRNA:   3'- -GGACA------------UGCUGCGau-UGuuGCACGCGu -5'
6964 3' -50.6 NC_001875.2 + 28217 0.66 0.993687
Target:  5'- aCUGggcgagACGaACGCcauUAAC-ACGUGCGUAa -3'
miRNA:   3'- gGACa-----UGC-UGCG---AUUGuUGCACGCGU- -5'
6964 3' -50.6 NC_001875.2 + 63682 0.66 0.993687
Target:  5'- uCUUGcGCGGCGC--GCAGCGUuCGCc -3'
miRNA:   3'- -GGACaUGCUGCGauUGUUGCAcGCGu -5'
6964 3' -50.6 NC_001875.2 + 41460 0.66 0.993687
Target:  5'- gCCgGuUGCGGCGCgcGCGGCGUGUc-- -3'
miRNA:   3'- -GGaC-AUGCUGCGauUGUUGCACGcgu -5'
6964 3' -50.6 NC_001875.2 + 35035 0.66 0.993687
Target:  5'- gCUUG-ACGGCGCUgGGCAuUGUGCGa- -3'
miRNA:   3'- -GGACaUGCUGCGA-UUGUuGCACGCgu -5'
6964 3' -50.6 NC_001875.2 + 118451 0.66 0.993687
Target:  5'- gCUGUGCuACGCguGCuGCGUcGCGCu -3'
miRNA:   3'- gGACAUGcUGCGauUGuUGCA-CGCGu -5'
6964 3' -50.6 NC_001875.2 + 65776 0.66 0.992705
Target:  5'- gCUGgGCGAgcaCGCgcGCGGCGUcgGCGCGc -3'
miRNA:   3'- gGACaUGCU---GCGauUGUUGCA--CGCGU- -5'
6964 3' -50.6 NC_001875.2 + 18156 0.66 0.992705
Target:  5'- aCUgGUGCGGCGCgcGCGACGc-CGCc -3'
miRNA:   3'- gGA-CAUGCUGCGauUGUUGCacGCGu -5'
6964 3' -50.6 NC_001875.2 + 29775 0.66 0.992705
Target:  5'- gCCaUGUACGGcCGCggGugGACGgGCGUg -3'
miRNA:   3'- -GG-ACAUGCU-GCGa-UugUUGCaCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.