miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6964 5' -61.3 NC_001875.2 + 73645 0.66 0.654454
Target:  5'- gGCUGCugCGGCGGCuGCGG-CGGC-UGCGg -3'
miRNA:   3'- -UGGCG--GCUGUCG-CGCCaGUCGcACGU- -5'
6964 5' -61.3 NC_001875.2 + 82163 0.66 0.654454
Target:  5'- uGCUgGCCGACGG-GCGGUa--CGUGCGc -3'
miRNA:   3'- -UGG-CGGCUGUCgCGCCAgucGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 49588 0.66 0.654454
Target:  5'- uGCgCGCCGACgAGCGCuaccacCAGCGcGCAa -3'
miRNA:   3'- -UG-GCGGCUG-UCGCGcca---GUCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 67151 0.66 0.654454
Target:  5'- uGCgGCUGuCuGCGCGGgaCAGCGUGg- -3'
miRNA:   3'- -UGgCGGCuGuCGCGCCa-GUCGCACgu -5'
6964 5' -61.3 NC_001875.2 + 41037 0.66 0.654454
Target:  5'- gGCCGUgGACGGCguuuuuacgaGCGGcgUGGuCGUGCAc -3'
miRNA:   3'- -UGGCGgCUGUCG----------CGCCa-GUC-GCACGU- -5'
6964 5' -61.3 NC_001875.2 + 39629 0.66 0.654454
Target:  5'- gGCC-CCGGCAGuCGaCGGUggCGGCGUuugcGCAa -3'
miRNA:   3'- -UGGcGGCUGUC-GC-GCCA--GUCGCA----CGU- -5'
6964 5' -61.3 NC_001875.2 + 79542 0.66 0.644452
Target:  5'- -gCGCC-ACAGCGCaaaGGcCAGCG-GCAu -3'
miRNA:   3'- ugGCGGcUGUCGCG---CCaGUCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 72560 0.66 0.644452
Target:  5'- cGCUGCgGGCgcgGGCGCGGgcgcugCGG-GUGCGg -3'
miRNA:   3'- -UGGCGgCUG---UCGCGCCa-----GUCgCACGU- -5'
6964 5' -61.3 NC_001875.2 + 5570 0.66 0.644452
Target:  5'- -aCGgCGACuGUGCGGUUuuGCGUGUc -3'
miRNA:   3'- ugGCgGCUGuCGCGCCAGu-CGCACGu -5'
6964 5' -61.3 NC_001875.2 + 69937 0.66 0.634441
Target:  5'- uCCGCCGugacACGGCGCGuGUCGGgccaCG-GCGa -3'
miRNA:   3'- uGGCGGC----UGUCGCGC-CAGUC----GCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 113664 0.66 0.634441
Target:  5'- cCCGCCGGCAccGCcacaGUGG-CGGCGUcGCGc -3'
miRNA:   3'- uGGCGGCUGU--CG----CGCCaGUCGCA-CGU- -5'
6964 5' -61.3 NC_001875.2 + 33886 0.66 0.634441
Target:  5'- gGCCGaaaUGACuAGCGCcucggGGUCGGUuugGUGCAg -3'
miRNA:   3'- -UGGCg--GCUG-UCGCG-----CCAGUCG---CACGU- -5'
6964 5' -61.3 NC_001875.2 + 65443 0.66 0.634441
Target:  5'- cACCGCUGGCGGUcgGUGGcCAGgucgaacaCGUGCu -3'
miRNA:   3'- -UGGCGGCUGUCG--CGCCaGUC--------GCACGu -5'
6964 5' -61.3 NC_001875.2 + 88332 0.66 0.634441
Target:  5'- cACCGaCGACcuggagGGCGUcaaGGUgugCAGCGUGCAc -3'
miRNA:   3'- -UGGCgGCUG------UCGCG---CCA---GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 33553 0.66 0.624427
Target:  5'- uUgGCC-ACAGUGCGGUCGccGCGggGCAc -3'
miRNA:   3'- uGgCGGcUGUCGCGCCAGU--CGCa-CGU- -5'
6964 5' -61.3 NC_001875.2 + 102989 0.66 0.624427
Target:  5'- cCUGCgGGCA-CGUGGU-GGCGUGCGg -3'
miRNA:   3'- uGGCGgCUGUcGCGCCAgUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 5832 0.66 0.624427
Target:  5'- cGCCGCCGAUcuGGaCGCGcccgcgUAGCaGUGCAc -3'
miRNA:   3'- -UGGCGGCUG--UC-GCGCca----GUCG-CACGU- -5'
6964 5' -61.3 NC_001875.2 + 124553 0.66 0.624427
Target:  5'- --gGUCGGCGGCGgGGUCgcuuuGGCG-GCAc -3'
miRNA:   3'- uggCGGCUGUCGCgCCAG-----UCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 90716 0.66 0.624427
Target:  5'- gGCCGCCGGucaAGCGCGacaCGaCGUGCGa -3'
miRNA:   3'- -UGGCGGCUg--UCGCGCca-GUcGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 122125 0.66 0.624427
Target:  5'- -aCGCUucgggcGCGGCGCGGcCGGCGcGCAc -3'
miRNA:   3'- ugGCGGc-----UGUCGCGCCaGUCGCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.