miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6964 5' -61.3 NC_001875.2 + 49588 0.66 0.654454
Target:  5'- uGCgCGCCGACgAGCGCuaccacCAGCGcGCAa -3'
miRNA:   3'- -UG-GCGGCUG-UCGCGcca---GUCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 65762 0.66 0.618421
Target:  5'- gACCugaGCCGGCGgcugggcgagcacgcGCGCGGcgUCGGCGcGCGg -3'
miRNA:   3'- -UGG---CGGCUGU---------------CGCGCC--AGUCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 72560 0.66 0.644452
Target:  5'- cGCUGCgGGCgcgGGCGCGGgcgcugCGG-GUGCGg -3'
miRNA:   3'- -UGGCGgCUG---UCGCGCCa-----GUCgCACGU- -5'
6964 5' -61.3 NC_001875.2 + 114236 0.66 0.604425
Target:  5'- gUCGUCGcUGGaCGCGGgccgCAGCGUGUAa -3'
miRNA:   3'- uGGCGGCuGUC-GCGCCa---GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 95031 0.66 0.604425
Target:  5'- aACUGCCG-CGGCGCGuaacgcgCAcCGUGCAg -3'
miRNA:   3'- -UGGCGGCuGUCGCGCca-----GUcGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 82163 0.66 0.654454
Target:  5'- uGCUgGCCGACGG-GCGGUa--CGUGCGc -3'
miRNA:   3'- -UGG-CGGCUGUCgCGCCAgucGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 122041 0.66 0.604425
Target:  5'- aGCCGCCGAUGGCGC------CGUGCAa -3'
miRNA:   3'- -UGGCGGCUGUCGCGccagucGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 94244 0.66 0.604425
Target:  5'- cGCCGCCGuGCGGC-CGGccgCGGCGcucGCGc -3'
miRNA:   3'- -UGGCGGC-UGUCGcGCCa--GUCGCa--CGU- -5'
6964 5' -61.3 NC_001875.2 + 67151 0.66 0.654454
Target:  5'- uGCgGCUGuCuGCGCGGgaCAGCGUGg- -3'
miRNA:   3'- -UGgCGGCuGuCGCGCCa-GUCGCACgu -5'
6964 5' -61.3 NC_001875.2 + 73645 0.66 0.654454
Target:  5'- gGCUGCugCGGCGGCuGCGG-CGGC-UGCGg -3'
miRNA:   3'- -UGGCG--GCUGUCG-CGCCaGUCGcACGU- -5'
6964 5' -61.3 NC_001875.2 + 122125 0.66 0.624427
Target:  5'- -aCGCUucgggcGCGGCGCGGcCGGCGcGCAc -3'
miRNA:   3'- ugGCGGc-----UGUCGCGCCaGUCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 38645 0.66 0.604425
Target:  5'- cGCCGCCGACu-CGCcGUaccGCGUGCu -3'
miRNA:   3'- -UGGCGGCUGucGCGcCAgu-CGCACGu -5'
6964 5' -61.3 NC_001875.2 + 33553 0.66 0.624427
Target:  5'- uUgGCC-ACAGUGCGGUCGccGCGggGCAc -3'
miRNA:   3'- uGgCGGcUGUCGCGCCAGU--CGCa-CGU- -5'
6964 5' -61.3 NC_001875.2 + 124553 0.66 0.624427
Target:  5'- --gGUCGGCGGCGgGGUCgcuuuGGCG-GCAc -3'
miRNA:   3'- uggCGGCUGUCGCgCCAG-----UCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 37503 0.66 0.61442
Target:  5'- gGCCGgCGACGGUGCGGaCGacGCGcccUGCc -3'
miRNA:   3'- -UGGCgGCUGUCGCGCCaGU--CGC---ACGu -5'
6964 5' -61.3 NC_001875.2 + 33886 0.66 0.634441
Target:  5'- gGCCGaaaUGACuAGCGCcucggGGUCGGUuugGUGCAg -3'
miRNA:   3'- -UGGCg--GCUG-UCGCG-----CCAGUCG---CACGU- -5'
6964 5' -61.3 NC_001875.2 + 65443 0.66 0.634441
Target:  5'- cACCGCUGGCGGUcgGUGGcCAGgucgaacaCGUGCu -3'
miRNA:   3'- -UGGCGGCUGUCG--CGCCaGUC--------GCACGu -5'
6964 5' -61.3 NC_001875.2 + 127961 0.66 0.604425
Target:  5'- aGCCuGCCcagcuuGGCGGCGCGGUgCuGcCGUGCc -3'
miRNA:   3'- -UGG-CGG------CUGUCGCGCCA-GuC-GCACGu -5'
6964 5' -61.3 NC_001875.2 + 90716 0.66 0.624427
Target:  5'- gGCCGCCGGucaAGCGCGacaCGaCGUGCGa -3'
miRNA:   3'- -UGGCGGCUg--UCGCGCca-GUcGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 5832 0.66 0.624427
Target:  5'- cGCCGCCGAUcuGGaCGCGcccgcgUAGCaGUGCAc -3'
miRNA:   3'- -UGGCGGCUG--UC-GCGCca----GUCG-CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.