miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6964 5' -61.3 NC_001875.2 + 124553 0.66 0.624427
Target:  5'- --gGUCGGCGGCGgGGUCgcuuuGGCG-GCAc -3'
miRNA:   3'- uggCGGCUGUCGCgCCAG-----UCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 37503 0.66 0.61442
Target:  5'- gGCCGgCGACGGUGCGGaCGacGCGcccUGCc -3'
miRNA:   3'- -UGGCgGCUGUCGCGCCaGU--CGC---ACGu -5'
6964 5' -61.3 NC_001875.2 + 38645 0.66 0.604425
Target:  5'- cGCCGCCGACu-CGCcGUaccGCGUGCu -3'
miRNA:   3'- -UGGCGGCUGucGCGcCAgu-CGCACGu -5'
6964 5' -61.3 NC_001875.2 + 127961 0.66 0.604425
Target:  5'- aGCCuGCCcagcuuGGCGGCGCGGUgCuGcCGUGCc -3'
miRNA:   3'- -UGG-CGG------CUGUCGCGCCA-GuC-GCACGu -5'
6964 5' -61.3 NC_001875.2 + 114236 0.66 0.604425
Target:  5'- gUCGUCGcUGGaCGCGGgccgCAGCGUGUAa -3'
miRNA:   3'- uGGCGGCuGUC-GCGCCa---GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 122041 0.66 0.604425
Target:  5'- aGCCGCCGAUGGCGC------CGUGCAa -3'
miRNA:   3'- -UGGCGGCUGUCGCGccagucGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 67151 0.66 0.654454
Target:  5'- uGCgGCUGuCuGCGCGGgaCAGCGUGg- -3'
miRNA:   3'- -UGgCGGCuGuCGCGCCa-GUCGCACgu -5'
6964 5' -61.3 NC_001875.2 + 72560 0.66 0.644452
Target:  5'- cGCUGCgGGCgcgGGCGCGGgcgcugCGG-GUGCGg -3'
miRNA:   3'- -UGGCGgCUG---UCGCGCCa-----GUCgCACGU- -5'
6964 5' -61.3 NC_001875.2 + 33886 0.66 0.634441
Target:  5'- gGCCGaaaUGACuAGCGCcucggGGUCGGUuugGUGCAg -3'
miRNA:   3'- -UGGCg--GCUG-UCGCG-----CCAGUCG---CACGU- -5'
6964 5' -61.3 NC_001875.2 + 41596 0.67 0.574585
Target:  5'- -aCGCCGAaGGCGCGGgcgCGgGCGcggGCAu -3'
miRNA:   3'- ugGCGGCUgUCGCGCCa--GU-CGCa--CGU- -5'
6964 5' -61.3 NC_001875.2 + 45262 0.67 0.59445
Target:  5'- cACCaGCUgGAUGGCGCGGUUAaUGUGCu -3'
miRNA:   3'- -UGG-CGG-CUGUCGCGCCAGUcGCACGu -5'
6964 5' -61.3 NC_001875.2 + 51189 0.67 0.554876
Target:  5'- uGCC-CaCGACGGCGCGGUUcuGGCGccGCc -3'
miRNA:   3'- -UGGcG-GCUGUCGCGCCAG--UCGCa-CGu -5'
6964 5' -61.3 NC_001875.2 + 2667 0.67 0.564708
Target:  5'- -gCGCCGGCGGCGCcuGGggcaacugCGGCGccucgGCAg -3'
miRNA:   3'- ugGCGGCUGUCGCG--CCa-------GUCGCa----CGU- -5'
6964 5' -61.3 NC_001875.2 + 102002 0.67 0.554876
Target:  5'- gGCgUGCgCGGCGGCgGUGGacugCAGCGUGCc -3'
miRNA:   3'- -UG-GCG-GCUGUCG-CGCCa---GUCGCACGu -5'
6964 5' -61.3 NC_001875.2 + 19865 0.67 0.573595
Target:  5'- gGCCGCgucGCGGCGCGGgCGccguuugcgaaacGCGUGCGc -3'
miRNA:   3'- -UGGCGgc-UGUCGCGCCaGU-------------CGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 11832 0.67 0.564708
Target:  5'- -gCGCCGGUGGCGgGGUCGGUGUa-- -3'
miRNA:   3'- ugGCGGCUGUCGCgCCAGUCGCAcgu -5'
6964 5' -61.3 NC_001875.2 + 50485 0.67 0.564708
Target:  5'- cGCgGCCGGCGcgugcGCGCGGcacCAGCGcGCc -3'
miRNA:   3'- -UGgCGGCUGU-----CGCGCCa--GUCGCaCGu -5'
6964 5' -61.3 NC_001875.2 + 89152 0.67 0.584501
Target:  5'- aACCGCgCG-CcGCGCGGUUu-CGUGCAc -3'
miRNA:   3'- -UGGCG-GCuGuCGCGCCAGucGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 20062 0.67 0.574585
Target:  5'- cACCGCCGucacCAGCGacaccaguCGGUCGGCGcacgugauggGCGc -3'
miRNA:   3'- -UGGCGGCu---GUCGC--------GCCAGUCGCa---------CGU- -5'
6964 5' -61.3 NC_001875.2 + 9044 0.67 0.578547
Target:  5'- aGCCGCCGGCcGCGCcGGUUuccGCGccgguuuccgccaacUGCGc -3'
miRNA:   3'- -UGGCGGCUGuCGCG-CCAGu--CGC---------------ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.