miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6964 5' -61.3 NC_001875.2 + 73775 1.07 0.001027
Target:  5'- gACCGCCGACAGCGCGGUCAGCGUGCAc -3'
miRNA:   3'- -UGGCGGCUGUCGCGCCAGUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 29270 0.82 0.07111
Target:  5'- gGCCGCCGACcgcgccggcggGGCGCGGUCguguGGCGUGUc -3'
miRNA:   3'- -UGGCGGCUG-----------UCGCGCCAG----UCGCACGu -5'
6964 5' -61.3 NC_001875.2 + 98190 0.81 0.072999
Target:  5'- cGCCGCCGACGGCGUcgaGGUgAGCGgcUGCAa -3'
miRNA:   3'- -UGGCGGCUGUCGCG---CCAgUCGC--ACGU- -5'
6964 5' -61.3 NC_001875.2 + 50544 0.78 0.119391
Target:  5'- cGCCGCCGGCGGCGCGcguGUCuuuuGCGggGCAu -3'
miRNA:   3'- -UGGCGGCUGUCGCGC---CAGu---CGCa-CGU- -5'
6964 5' -61.3 NC_001875.2 + 54112 0.78 0.122475
Target:  5'- cGCCGCCGAauuGCGCGuGUacacUAGCGUGCAa -3'
miRNA:   3'- -UGGCGGCUgu-CGCGC-CA----GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 102571 0.77 0.139032
Target:  5'- cGCC-CCGcCGGCGCGGUCGGCGgccGCGc -3'
miRNA:   3'- -UGGcGGCuGUCGCGCCAGUCGCa--CGU- -5'
6964 5' -61.3 NC_001875.2 + 57795 0.76 0.161598
Target:  5'- -aCGCCGAgCAGCGCGGUUuuuAGCGcgGCAa -3'
miRNA:   3'- ugGCGGCU-GUCGCGCCAG---UCGCa-CGU- -5'
6964 5' -61.3 NC_001875.2 + 9959 0.75 0.19205
Target:  5'- gUCGaCGACAGCGUGGUgcaauugaCGGCGUGCAg -3'
miRNA:   3'- uGGCgGCUGUCGCGCCA--------GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 26008 0.75 0.201633
Target:  5'- gGCCGUCGGCGccuGgGCGGUCAGCaUGCu -3'
miRNA:   3'- -UGGCGGCUGU---CgCGCCAGUCGcACGu -5'
6964 5' -61.3 NC_001875.2 + 11567 0.75 0.201633
Target:  5'- cGCCGCCGA-AGCGgGGagCGGUGUGCGc -3'
miRNA:   3'- -UGGCGGCUgUCGCgCCa-GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 92534 0.75 0.201633
Target:  5'- cGCCGCCGgcacgguguGCAGCGCGcacuugguGUCGGCGgGCAg -3'
miRNA:   3'- -UGGCGGC---------UGUCGCGC--------CAGUCGCaCGU- -5'
6964 5' -61.3 NC_001875.2 + 81308 0.74 0.216785
Target:  5'- cGCCGCCGGCGGCGCcuccuccucGUCAuCGUGCc -3'
miRNA:   3'- -UGGCGGCUGUCGCGc--------CAGUcGCACGu -5'
6964 5' -61.3 NC_001875.2 + 112212 0.74 0.222048
Target:  5'- gGCCGuuGACAGCaaGGUCAcuGCGcUGCAa -3'
miRNA:   3'- -UGGCggCUGUCGcgCCAGU--CGC-ACGU- -5'
6964 5' -61.3 NC_001875.2 + 127409 0.74 0.222048
Target:  5'- -gUGCUGGCGGCGCGcGUCAGCaugccgccGUGCAu -3'
miRNA:   3'- ugGCGGCUGUCGCGC-CAGUCG--------CACGU- -5'
6964 5' -61.3 NC_001875.2 + 109018 0.74 0.232901
Target:  5'- uGCCGCCGACGGUGCcGUCGGaccGCAc -3'
miRNA:   3'- -UGGCGGCUGUCGCGcCAGUCgcaCGU- -5'
6964 5' -61.3 NC_001875.2 + 33662 0.74 0.244196
Target:  5'- cGCCGUCGGCGGCGUGGUaaaacaaaCGGCccgacGUGCGc -3'
miRNA:   3'- -UGGCGGCUGUCGCGCCA--------GUCG-----CACGU- -5'
6964 5' -61.3 NC_001875.2 + 57211 0.73 0.268149
Target:  5'- cGCUGCCGACAGCGCaGUgCAGCcgauugagGCAc -3'
miRNA:   3'- -UGGCGGCUGUCGCGcCA-GUCGca------CGU- -5'
6964 5' -61.3 NC_001875.2 + 68554 0.73 0.268149
Target:  5'- uGCCGCCGcgGCGGCgGCGGUCGcgcaccGCGUgGCGc -3'
miRNA:   3'- -UGGCGGC--UGUCG-CGCCAGU------CGCA-CGU- -5'
6964 5' -61.3 NC_001875.2 + 130046 0.73 0.268149
Target:  5'- uCCGCCGACGGaaaugGCGG-CGGCGgcgGCGg -3'
miRNA:   3'- uGGCGGCUGUCg----CGCCaGUCGCa--CGU- -5'
6964 5' -61.3 NC_001875.2 + 130094 0.72 0.287334
Target:  5'- uCCGCCGACGGaaaugGCGG-CGGCGgcgGCGc -3'
miRNA:   3'- uGGCGGCUGUCg----CGCCaGUCGCa--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.