miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6964 5' -61.3 NC_001875.2 + 2667 0.67 0.564708
Target:  5'- -gCGCCGGCGGCGCcuGGggcaacugCGGCGccucgGCAg -3'
miRNA:   3'- ugGCGGCUGUCGCG--CCa-------GUCGCa----CGU- -5'
6964 5' -61.3 NC_001875.2 + 5570 0.66 0.644452
Target:  5'- -aCGgCGACuGUGCGGUUuuGCGUGUc -3'
miRNA:   3'- ugGCgGCUGuCGCGCCAGu-CGCACGu -5'
6964 5' -61.3 NC_001875.2 + 5832 0.66 0.624427
Target:  5'- cGCCGCCGAUcuGGaCGCGcccgcgUAGCaGUGCAc -3'
miRNA:   3'- -UGGCGGCUG--UC-GCGCca----GUCG-CACGU- -5'
6964 5' -61.3 NC_001875.2 + 9044 0.67 0.578547
Target:  5'- aGCCGCCGGCcGCGCcGGUUuccGCGccgguuuccgccaacUGCGc -3'
miRNA:   3'- -UGGCGGCUGuCGCG-CCAGu--CGC---------------ACGU- -5'
6964 5' -61.3 NC_001875.2 + 9571 0.7 0.374749
Target:  5'- gGCCgGCCGACcgauuGGCcuGCGGUUAGCGguggGCGc -3'
miRNA:   3'- -UGG-CGGCUG-----UCG--CGCCAGUCGCa---CGU- -5'
6964 5' -61.3 NC_001875.2 + 9959 0.75 0.19205
Target:  5'- gUCGaCGACAGCGUGGUgcaauugaCGGCGUGCAg -3'
miRNA:   3'- uGGCgGCUGUCGCGCCA--------GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 10457 0.68 0.506587
Target:  5'- cGCgGCgCGGCGGCGCGcUCAGUGaaugGCGc -3'
miRNA:   3'- -UGgCG-GCUGUCGCGCcAGUCGCa---CGU- -5'
6964 5' -61.3 NC_001875.2 + 11102 0.69 0.424731
Target:  5'- gGCCGCCGucuCGGCGCcG-CAGC-UGCAa -3'
miRNA:   3'- -UGGCGGCu--GUCGCGcCaGUCGcACGU- -5'
6964 5' -61.3 NC_001875.2 + 11567 0.75 0.201633
Target:  5'- cGCCGCCGA-AGCGgGGagCGGUGUGCGc -3'
miRNA:   3'- -UGGCGGCUgUCGCgCCa-GUCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 11832 0.67 0.564708
Target:  5'- -gCGCCGGUGGCGgGGUCGGUGUa-- -3'
miRNA:   3'- ugGCGGCUGUCGCgCCAGUCGCAcgu -5'
6964 5' -61.3 NC_001875.2 + 11939 0.67 0.59445
Target:  5'- gGCgCGCCGACuguGCGCGcGaccggCGGCGcguUGCAa -3'
miRNA:   3'- -UG-GCGGCUGu--CGCGC-Ca----GUCGC---ACGU- -5'
6964 5' -61.3 NC_001875.2 + 12306 0.69 0.478484
Target:  5'- cGCCGCCGuguGCGUGGUCAacGCGcccgGCc -3'
miRNA:   3'- -UGGCGGCuguCGCGCCAGU--CGCa---CGu -5'
6964 5' -61.3 NC_001875.2 + 18271 0.68 0.522822
Target:  5'- uACCGUCGACA-CGCGGUCGcacaaggccgcuucGCGcGCu -3'
miRNA:   3'- -UGGCGGCUGUcGCGCCAGU--------------CGCaCGu -5'
6964 5' -61.3 NC_001875.2 + 19865 0.67 0.573595
Target:  5'- gGCCGCgucGCGGCGCGGgCGccguuugcgaaacGCGUGCGc -3'
miRNA:   3'- -UGGCGgc-UGUCGCGCCaGU-------------CGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 20062 0.67 0.574585
Target:  5'- cACCGCCGucacCAGCGacaccaguCGGUCGGCGcacgugauggGCGc -3'
miRNA:   3'- -UGGCGGCu---GUCGC--------GCCAGUCGCa---------CGU- -5'
6964 5' -61.3 NC_001875.2 + 20793 0.66 0.624427
Target:  5'- aGCCGUCGACGcgcaguGCGCGGgcgucgucgCAGCGcuUGUc -3'
miRNA:   3'- -UGGCGGCUGU------CGCGCCa--------GUCGC--ACGu -5'
6964 5' -61.3 NC_001875.2 + 21558 0.67 0.574585
Target:  5'- uACCGCgGGCcGCGCGauaUUAGCGUGg- -3'
miRNA:   3'- -UGGCGgCUGuCGCGCc--AGUCGCACgu -5'
6964 5' -61.3 NC_001875.2 + 21683 0.69 0.424731
Target:  5'- cGCCGcCCGACgAGCGCGacgCGGUGcUGCGg -3'
miRNA:   3'- -UGGC-GGCUG-UCGCGCca-GUCGC-ACGU- -5'
6964 5' -61.3 NC_001875.2 + 23651 0.69 0.46018
Target:  5'- uGCuCGCCGAggccCAGgucauCGCGGUCcGUGUGCAc -3'
miRNA:   3'- -UG-GCGGCU----GUC-----GCGCCAGuCGCACGU- -5'
6964 5' -61.3 NC_001875.2 + 23752 0.71 0.336248
Target:  5'- uAUgGCCGugAGUGCGGUgCAGCccGCAg -3'
miRNA:   3'- -UGgCGGCugUCGCGCCA-GUCGcaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.