miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6965 3' -54.5 NC_001875.2 + 93191 0.66 0.957337
Target:  5'- aGCaGCacGCGGu-ACgGCGAGuCGGCGGc -3'
miRNA:   3'- -CGcCG--CGCUuuUGgCGCUUuGCCGCC- -5'
6965 3' -54.5 NC_001875.2 + 2294 0.66 0.957337
Target:  5'- uGCGcGCGCGccguGGCCGCGcgcagcuCGGCc- -3'
miRNA:   3'- -CGC-CGCGCuu--UUGGCGCuuu----GCCGcc -5'
6965 3' -54.5 NC_001875.2 + 125058 0.66 0.957337
Target:  5'- uGCGGguCGCugaugcccuGAAAcacGCCGCGAAugcGCGGCa- -3'
miRNA:   3'- -CGCC--GCG---------CUUU---UGGCGCUU---UGCCGcc -5'
6965 3' -54.5 NC_001875.2 + 41456 0.66 0.957337
Target:  5'- -aGGCGcCGGuuGCgGCGcgcGCGGCGu -3'
miRNA:   3'- cgCCGC-GCUuuUGgCGCuu-UGCCGCc -5'
6965 3' -54.5 NC_001875.2 + 90709 0.66 0.957337
Target:  5'- cCGGCGCGGccGCCggucaagcGCGAcacGACGuGCGa -3'
miRNA:   3'- cGCCGCGCUuuUGG--------CGCU---UUGC-CGCc -5'
6965 3' -54.5 NC_001875.2 + 52048 0.66 0.953478
Target:  5'- aGCGGCcCGAcGAcCCGCccuaccugcccGAAGCGGUGu -3'
miRNA:   3'- -CGCCGcGCUuUU-GGCG-----------CUUUGCCGCc -5'
6965 3' -54.5 NC_001875.2 + 99279 0.66 0.953478
Target:  5'- cGCGGCacuGCugcAGCCGCuccuCGGCGGc -3'
miRNA:   3'- -CGCCG---CGcuuUUGGCGcuuuGCCGCC- -5'
6965 3' -54.5 NC_001875.2 + 10682 0.66 0.953478
Target:  5'- cGCaGGCGCu---GCCGC--AACGGCuGGa -3'
miRNA:   3'- -CG-CCGCGcuuuUGGCGcuUUGCCG-CC- -5'
6965 3' -54.5 NC_001875.2 + 104762 0.66 0.953478
Target:  5'- uCGGCGCcgacaaucucaGAuaucaaGGGCCGCGAucgcCGGCGa -3'
miRNA:   3'- cGCCGCG-----------CU------UUUGGCGCUuu--GCCGCc -5'
6965 3' -54.5 NC_001875.2 + 59040 0.66 0.953478
Target:  5'- -aGGgGCGAAAuuGCCGCGuugcaAAACGcGuCGGc -3'
miRNA:   3'- cgCCgCGCUUU--UGGCGC-----UUUGC-C-GCC- -5'
6965 3' -54.5 NC_001875.2 + 47675 0.66 0.953478
Target:  5'- cGCGGcCGCGGcgcGCCGCGcguuucucAAC-GCGGg -3'
miRNA:   3'- -CGCC-GCGCUuu-UGGCGCu-------UUGcCGCC- -5'
6965 3' -54.5 NC_001875.2 + 56707 0.66 0.953478
Target:  5'- uUGGC-CGAGGcCgCGCGAAACGuacGCGGu -3'
miRNA:   3'- cGCCGcGCUUUuG-GCGCUUUGC---CGCC- -5'
6965 3' -54.5 NC_001875.2 + 30825 0.66 0.951053
Target:  5'- cGCGGCggcaaacagguuguuGCGcAAAACCGCcGcAAACGccGCGGc -3'
miRNA:   3'- -CGCCG---------------CGC-UUUUGGCG-C-UUUGC--CGCC- -5'
6965 3' -54.5 NC_001875.2 + 17652 0.66 0.949391
Target:  5'- uGCGcaaucGCGCGcuGGCgGUGAAGCuGGCGu -3'
miRNA:   3'- -CGC-----CGCGCuuUUGgCGCUUUG-CCGCc -5'
6965 3' -54.5 NC_001875.2 + 81728 0.66 0.949391
Target:  5'- aCGuGCGCGucaacGACCugcaGUGGAuuccGCGGCGGg -3'
miRNA:   3'- cGC-CGCGCuu---UUGG----CGCUU----UGCCGCC- -5'
6965 3' -54.5 NC_001875.2 + 90005 0.66 0.949391
Target:  5'- cGCGGCGCGgcAACuggaCGCGcAACuGGCn- -3'
miRNA:   3'- -CGCCGCGCuuUUG----GCGCuUUG-CCGcc -5'
6965 3' -54.5 NC_001875.2 + 123342 0.66 0.949391
Target:  5'- cGCGGCGCccacacGGACgGCGcc-CGGCGu -3'
miRNA:   3'- -CGCCGCGcu----UUUGgCGCuuuGCCGCc -5'
6965 3' -54.5 NC_001875.2 + 111611 0.66 0.949391
Target:  5'- gGUGGaCGUGuucACCuCG-AGCGGCGGa -3'
miRNA:   3'- -CGCC-GCGCuuuUGGcGCuUUGCCGCC- -5'
6965 3' -54.5 NC_001875.2 + 89794 0.66 0.949391
Target:  5'- aCGuGCGCGAAcGCaGCGcGGGCGGCa- -3'
miRNA:   3'- cGC-CGCGCUUuUGgCGC-UUUGCCGcc -5'
6965 3' -54.5 NC_001875.2 + 17973 0.66 0.949391
Target:  5'- -gGGCGUGGAcgacgugcCCGCGuucAACGuGCGGc -3'
miRNA:   3'- cgCCGCGCUUuu------GGCGCu--UUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.