miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6965 5' -52.2 NC_001875.2 + 103316 0.66 0.979621
Target:  5'- uGACCgGCGUgccggGCGACGCG-UGCG-Cg -3'
miRNA:   3'- -CUGG-CGCAaag--CGCUGUGUaACGCaG- -5'
6965 5' -52.2 NC_001875.2 + 18483 0.66 0.979621
Target:  5'- cGCCGCGccgcaGCGACGCAgccGCGcCc -3'
miRNA:   3'- cUGGCGCaaag-CGCUGUGUaa-CGCaG- -5'
6965 5' -52.2 NC_001875.2 + 32718 0.66 0.979621
Target:  5'- cGACCuGgGgaaUUGCGACGCGUUGCc-- -3'
miRNA:   3'- -CUGG-CgCaa-AGCGCUGUGUAACGcag -5'
6965 5' -52.2 NC_001875.2 + 74507 0.66 0.979621
Target:  5'- cGCCGCGcgcagCGCuGcCGCAacaaUUGCGUCg -3'
miRNA:   3'- cUGGCGCaaa--GCG-CuGUGU----AACGCAG- -5'
6965 5' -52.2 NC_001875.2 + 102565 0.66 0.977237
Target:  5'- cGACCGCGcccCGcCGGCGCGgucgGCGg- -3'
miRNA:   3'- -CUGGCGCaaaGC-GCUGUGUaa--CGCag -5'
6965 5' -52.2 NC_001875.2 + 11946 0.66 0.977237
Target:  5'- cGACUGUGcg-CGCGACcgGCGgcGCGUUg -3'
miRNA:   3'- -CUGGCGCaaaGCGCUG--UGUaaCGCAG- -5'
6965 5' -52.2 NC_001875.2 + 36809 0.66 0.977237
Target:  5'- gGugCGCGUUaCGCGcCGCggcaGUUGCG-Cg -3'
miRNA:   3'- -CugGCGCAAaGCGCuGUG----UAACGCaG- -5'
6965 5' -52.2 NC_001875.2 + 62248 0.66 0.977237
Target:  5'- cGCCGCGUaaagCGCcACACGUacuccgacaccUGCGUa -3'
miRNA:   3'- cUGGCGCAaa--GCGcUGUGUA-----------ACGCAg -5'
6965 5' -52.2 NC_001875.2 + 21751 0.66 0.974654
Target:  5'- uGGCCGCGcgUgGCGGCcuccacGCGcaGCGUCu -3'
miRNA:   3'- -CUGGCGCaaAgCGCUG------UGUaaCGCAG- -5'
6965 5' -52.2 NC_001875.2 + 113576 0.66 0.974654
Target:  5'- cGACCGCGUgUCGaCGGuaaACAagagcGCGUCu -3'
miRNA:   3'- -CUGGCGCAaAGC-GCUg--UGUaa---CGCAG- -5'
6965 5' -52.2 NC_001875.2 + 17261 0.66 0.974654
Target:  5'- cGCCGCGUUUgccgaCGCGcacaauccgccGCACuggaGCGUCg -3'
miRNA:   3'- cUGGCGCAAA-----GCGC-----------UGUGuaa-CGCAG- -5'
6965 5' -52.2 NC_001875.2 + 1718 0.66 0.974654
Target:  5'- uGCUGCGgg-CGCGACACcgGUcGCGcCg -3'
miRNA:   3'- cUGGCGCaaaGCGCUGUG--UAaCGCaG- -5'
6965 5' -52.2 NC_001875.2 + 21558 0.66 0.974654
Target:  5'- uACCGCGggccgCGCGAUAUua-GCGUg -3'
miRNA:   3'- cUGGCGCaaa--GCGCUGUGuaaCGCAg -5'
6965 5' -52.2 NC_001875.2 + 36655 0.66 0.974654
Target:  5'- uGGCCGCGUcgUGCGcGCugAgcucggggcGCGUCa -3'
miRNA:   3'- -CUGGCGCAaaGCGC-UGugUaa-------CGCAG- -5'
6965 5' -52.2 NC_001875.2 + 63669 0.66 0.974654
Target:  5'- cACCGUGUaaucgucuugCGCGGCGCGcaGCGUUc -3'
miRNA:   3'- cUGGCGCAaa--------GCGCUGUGUaaCGCAG- -5'
6965 5' -52.2 NC_001875.2 + 99403 0.66 0.971864
Target:  5'- cGCCaGCGggUCGCGcaGCGCAUUGUu-- -3'
miRNA:   3'- cUGG-CGCaaAGCGC--UGUGUAACGcag -5'
6965 5' -52.2 NC_001875.2 + 123432 0.66 0.971864
Target:  5'- aGACCGCGg--CGUuACGCAgaucGCGUUu -3'
miRNA:   3'- -CUGGCGCaaaGCGcUGUGUaa--CGCAG- -5'
6965 5' -52.2 NC_001875.2 + 70201 0.66 0.971864
Target:  5'- aGCgGCGUgUCGCGGgcCACGUUaGCGaUCa -3'
miRNA:   3'- cUGgCGCAaAGCGCU--GUGUAA-CGC-AG- -5'
6965 5' -52.2 NC_001875.2 + 112823 0.66 0.971864
Target:  5'- cGCCGCGca-CGUGcaaaGCGCGUUGCGg- -3'
miRNA:   3'- cUGGCGCaaaGCGC----UGUGUAACGCag -5'
6965 5' -52.2 NC_001875.2 + 98913 0.66 0.96886
Target:  5'- cGCCGUagcUCGCGGCGCcgGUUGCG-Cg -3'
miRNA:   3'- cUGGCGcaaAGCGCUGUG--UAACGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.