miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6966 3' -49 NC_001875.2 + 36409 0.66 0.997901
Target:  5'- ------aGCCGCGCacgcuGGCCgGCGCc -3'
miRNA:   3'- guucuaaCGGCGCGauuu-UUGG-CGCG- -5'
6966 3' -49 NC_001875.2 + 126498 0.66 0.997901
Target:  5'- ---uGUUGCCuGaCGCcgUGAAGACUGUGCa -3'
miRNA:   3'- guucUAACGG-C-GCG--AUUUUUGGCGCG- -5'
6966 3' -49 NC_001875.2 + 130022 0.66 0.997901
Target:  5'- gCAGGGUcguUGCUGacgcacCGCUAAAAauaGCaCGCGCc -3'
miRNA:   3'- -GUUCUA---ACGGC------GCGAUUUU---UG-GCGCG- -5'
6966 3' -49 NC_001875.2 + 89379 0.66 0.997901
Target:  5'- ---uGUUGCUGCGUggcucGCCGCaGCg -3'
miRNA:   3'- guucUAACGGCGCGauuuuUGGCG-CG- -5'
6966 3' -49 NC_001875.2 + 123528 0.66 0.997901
Target:  5'- uCGAGGgcgUGCacccaaccCGCUGcuGGCCGUGCa -3'
miRNA:   3'- -GUUCUa--ACGgc------GCGAUuuUUGGCGCG- -5'
6966 3' -49 NC_001875.2 + 53254 0.66 0.997901
Target:  5'- -----gUGCCGgGCUuuGAAuuugUCGCGCg -3'
miRNA:   3'- guucuaACGGCgCGAuuUUU----GGCGCG- -5'
6966 3' -49 NC_001875.2 + 124863 0.66 0.997901
Target:  5'- aAAGA-UGCC-CGCUGuucAAGCaGCGCg -3'
miRNA:   3'- gUUCUaACGGcGCGAUu--UUUGgCGCG- -5'
6966 3' -49 NC_001875.2 + 38840 0.66 0.997901
Target:  5'- gGAGAacaGCauugaGCGCUAcauGAAAgCGCGCc -3'
miRNA:   3'- gUUCUaa-CGg----CGCGAU---UUUUgGCGCG- -5'
6966 3' -49 NC_001875.2 + 92596 0.66 0.99766
Target:  5'- gAAGGUUGCCGCugugcagagugguggGCgcgAGcgGCuUGCGCg -3'
miRNA:   3'- gUUCUAACGGCG---------------CGa--UUuuUG-GCGCG- -5'
6966 3' -49 NC_001875.2 + 77211 0.66 0.99766
Target:  5'- gAGGcgUGCCGCaacGCguacAAAAaaguguuccaccgauACCGCGCc -3'
miRNA:   3'- gUUCuaACGGCG---CGa---UUUU---------------UGGCGCG- -5'
6966 3' -49 NC_001875.2 + 130280 0.66 0.997487
Target:  5'- gCAGGGUcGUCGCugacgcaccGCUAAAAauaGCaCGCGCc -3'
miRNA:   3'- -GUUCUAaCGGCG---------CGAUUUU---UG-GCGCG- -5'
6966 3' -49 NC_001875.2 + 130214 0.66 0.997487
Target:  5'- gCAGGGUcGUCGCugacgcaccGCUAAAAauaGCaCGCGCc -3'
miRNA:   3'- -GUUCUAaCGGCG---------CGAUUUU---UG-GCGCG- -5'
6966 3' -49 NC_001875.2 + 130346 0.66 0.997487
Target:  5'- gCAGGGUcGUCGCugacgcaccGCUAAAAguaGCaCGCGCc -3'
miRNA:   3'- -GUUCUAaCGGCG---------CGAUUUU---UG-GCGCG- -5'
6966 3' -49 NC_001875.2 + 67145 0.66 0.997487
Target:  5'- ---uGUUGCUGCgGCUGu---CUGCGCg -3'
miRNA:   3'- guucUAACGGCG-CGAUuuuuGGCGCG- -5'
6966 3' -49 NC_001875.2 + 34675 0.66 0.997487
Target:  5'- aCAcGAUuggGCUGCGCgucAAGGGCCGCc- -3'
miRNA:   3'- -GUuCUAa--CGGCGCGa--UUUUUGGCGcg -5'
6966 3' -49 NC_001875.2 + 94247 0.66 0.997487
Target:  5'- ------cGCCGUGCggccGGCCGCGg -3'
miRNA:   3'- guucuaaCGGCGCGauuuUUGGCGCg -5'
6966 3' -49 NC_001875.2 + 108862 0.66 0.997487
Target:  5'- uCAGGA-UGCaGuCGCUGGAAAgCGCGg -3'
miRNA:   3'- -GUUCUaACGgC-GCGAUUUUUgGCGCg -5'
6966 3' -49 NC_001875.2 + 131036 0.66 0.997487
Target:  5'- gCAAGcuGUUuCUGCGC-AAAAcaauuGCCGCGCa -3'
miRNA:   3'- -GUUC--UAAcGGCGCGaUUUU-----UGGCGCG- -5'
6966 3' -49 NC_001875.2 + 46359 0.66 0.997487
Target:  5'- -cAGAUggaaauuugGCCGCaGCU----GCUGCGCa -3'
miRNA:   3'- guUCUAa--------CGGCG-CGAuuuuUGGCGCG- -5'
6966 3' -49 NC_001875.2 + 69591 0.66 0.997487
Target:  5'- gGAGuacgUGUgGCGCUuuAcGCgGCGCg -3'
miRNA:   3'- gUUCua--ACGgCGCGAuuUuUGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.