miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6966 5' -57.6 NC_001875.2 + 38950 0.66 0.808667
Target:  5'- uUGCGCGCgCCUgaUGCuGAccaauucccugaacaACCUGUAGg -3'
miRNA:   3'- cACGCGCGgGGA--GCGuUU---------------UGGACGUC- -5'
6966 5' -57.6 NC_001875.2 + 32445 0.66 0.805094
Target:  5'- cUGCGCGaCCCgCUgGCGccGCCggUGCGGc -3'
miRNA:   3'- cACGCGC-GGG-GAgCGUuuUGG--ACGUC- -5'
6966 5' -57.6 NC_001875.2 + 39330 0.66 0.805094
Target:  5'- cGUGCGCGCgCUgcaggCGCA--GCCUGaCGc -3'
miRNA:   3'- -CACGCGCGgGGa----GCGUuuUGGAC-GUc -5'
6966 5' -57.6 NC_001875.2 + 82511 0.66 0.805094
Target:  5'- aUGUaGCGCUCCUCGgGcgGCCcgugcaacUGCAGg -3'
miRNA:   3'- cACG-CGCGGGGAGCgUuuUGG--------ACGUC- -5'
6966 5' -57.6 NC_001875.2 + 37521 0.66 0.805094
Target:  5'- -cGaCGCGCCCUgccuggacgCGCccAACCUGCuGg -3'
miRNA:   3'- caC-GCGCGGGGa--------GCGuuUUGGACGuC- -5'
6966 5' -57.6 NC_001875.2 + 65726 0.66 0.805094
Target:  5'- -gGCgGCGCCgCCUCGCcgcccGCCgcGCGGg -3'
miRNA:   3'- caCG-CGCGG-GGAGCGuuu--UGGa-CGUC- -5'
6966 5' -57.6 NC_001875.2 + 11939 0.66 0.79605
Target:  5'- -gGCGCGCCgaCUgugCGCGcGACCgGCGGc -3'
miRNA:   3'- caCGCGCGG--GGa--GCGUuUUGGaCGUC- -5'
6966 5' -57.6 NC_001875.2 + 67771 0.66 0.79605
Target:  5'- -gGCGCcaaaCCCCUCGUAcAAguaCUGCAGu -3'
miRNA:   3'- caCGCGc---GGGGAGCGUuUUg--GACGUC- -5'
6966 5' -57.6 NC_001875.2 + 45107 0.66 0.79605
Target:  5'- cGUGCGCGCCUUcaugUGCGAcgagcagugucGGCCggGCGGc -3'
miRNA:   3'- -CACGCGCGGGGa---GCGUU-----------UUGGa-CGUC- -5'
6966 5' -57.6 NC_001875.2 + 3014 0.66 0.786855
Target:  5'- aGUGCGCGUCgCCgUGCAAGuuguacacGCCguuggGCAGc -3'
miRNA:   3'- -CACGCGCGG-GGaGCGUUU--------UGGa----CGUC- -5'
6966 5' -57.6 NC_001875.2 + 44688 0.66 0.777517
Target:  5'- aUGCGCGUgaCCUCGCu--GCCcacGCGGu -3'
miRNA:   3'- cACGCGCGg-GGAGCGuuuUGGa--CGUC- -5'
6966 5' -57.6 NC_001875.2 + 29772 0.66 0.777517
Target:  5'- uGUGCuCGCCCCaaaugaucgUGCGGGACUgUGCGGg -3'
miRNA:   3'- -CACGcGCGGGGa--------GCGUUUUGG-ACGUC- -5'
6966 5' -57.6 NC_001875.2 + 81839 0.66 0.777517
Target:  5'- -cGCGCGCCCCaacCGCGAcaagcGCC-GCGu -3'
miRNA:   3'- caCGCGCGGGGa--GCGUUu----UGGaCGUc -5'
6966 5' -57.6 NC_001875.2 + 53733 0.66 0.777517
Target:  5'- -gGCGCGUacuugCCCgUGCAuaAAACUUGCGGg -3'
miRNA:   3'- caCGCGCG-----GGGaGCGU--UUUGGACGUC- -5'
6966 5' -57.6 NC_001875.2 + 50944 0.66 0.768047
Target:  5'- ---gGCGCCgCUCGCGcGACUUGCu- -3'
miRNA:   3'- cacgCGCGGgGAGCGUuUUGGACGuc -5'
6966 5' -57.6 NC_001875.2 + 99031 0.66 0.768047
Target:  5'- -aGCgGCGCCgUUCGCcGAGCUUGCc- -3'
miRNA:   3'- caCG-CGCGGgGAGCGuUUUGGACGuc -5'
6966 5' -57.6 NC_001875.2 + 21676 0.66 0.768047
Target:  5'- aGUGCGaCGCCgCCcgacgagCGCGAcgcgGugCUGCGGu -3'
miRNA:   3'- -CACGC-GCGG-GGa------GCGUU----UugGACGUC- -5'
6966 5' -57.6 NC_001875.2 + 31706 0.66 0.768047
Target:  5'- uUGCGCGCCgCCggCGCAuuACUUuCGGc -3'
miRNA:   3'- cACGCGCGG-GGa-GCGUuuUGGAcGUC- -5'
6966 5' -57.6 NC_001875.2 + 110292 0.67 0.758452
Target:  5'- -cGCGCGgCCCgCGguAAGCgUGCGu -3'
miRNA:   3'- caCGCGCgGGGaGCguUUUGgACGUc -5'
6966 5' -57.6 NC_001875.2 + 120771 0.67 0.758452
Target:  5'- -gGCGCGCgCCaCGCcAAACugCUGCAGu -3'
miRNA:   3'- caCGCGCGgGGaGCGuUUUG--GACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.