miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 3' -55.2 NC_001875.2 + 6923 0.67 0.85193
Target:  5'- gACCAaCACGuacgugaGCAaCGCGUCGUGCgUGc -3'
miRNA:   3'- -UGGUaGUGU-------UGUaGCGCGGCACGgAC- -5'
6967 3' -55.2 NC_001875.2 + 96063 0.67 0.844615
Target:  5'- cACCGgcacgCACuaugGACAaCGCGCCGUGCa-- -3'
miRNA:   3'- -UGGUa----GUG----UUGUaGCGCGGCACGgac -5'
6967 3' -55.2 NC_001875.2 + 102003 0.67 0.844615
Target:  5'- uGCCGggCACGGggcCGUCG-GCCGUGCCc- -3'
miRNA:   3'- -UGGUa-GUGUU---GUAGCgCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 100223 0.67 0.844615
Target:  5'- gGCCGugguUCugAGCAUCGCGUaccUGCUUGu -3'
miRNA:   3'- -UGGU----AGugUUGUAGCGCGgc-ACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 94255 0.68 0.825193
Target:  5'- gGCCGgcCGCGGCGcUCGCGCCGgcgcauccacucgaUGCCg- -3'
miRNA:   3'- -UGGUa-GUGUUGU-AGCGCGGC--------------ACGGac -5'
6967 3' -55.2 NC_001875.2 + 75660 0.68 0.819085
Target:  5'- gACCAUCAUGAUugauauUUGCGC-GUGCCUc -3'
miRNA:   3'- -UGGUAGUGUUGu-----AGCGCGgCACGGAc -5'
6967 3' -55.2 NC_001875.2 + 83784 0.68 0.819085
Target:  5'- uGCCAcUCGuugUAGCG-CGCGCCcucGUGCCUGu -3'
miRNA:   3'- -UGGU-AGU---GUUGUaGCGCGG---CACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 50781 0.68 0.819085
Target:  5'- cUCGUCGCGGCGcaccaUUaCGCCGUGCUUGc -3'
miRNA:   3'- uGGUAGUGUUGU-----AGcGCGGCACGGAC- -5'
6967 3' -55.2 NC_001875.2 + 68569 0.68 0.791962
Target:  5'- gGCgGUCGCGcaccGCGUgGCGCCGcugGCCg- -3'
miRNA:   3'- -UGgUAGUGU----UGUAgCGCGGCa--CGGac -5'
6967 3' -55.2 NC_001875.2 + 20723 0.68 0.791962
Target:  5'- cGCCGUgAC-GCAUUGCuGCCGUGCa-- -3'
miRNA:   3'- -UGGUAgUGuUGUAGCG-CGGCACGgac -5'
6967 3' -55.2 NC_001875.2 + 1147 0.69 0.782609
Target:  5'- gGCCGUgGCAaaagugggGCcgCGUGCCGUGCa-- -3'
miRNA:   3'- -UGGUAgUGU--------UGuaGCGCGGCACGgac -5'
6967 3' -55.2 NC_001875.2 + 51572 0.69 0.773114
Target:  5'- aGCCGuUCACGACG-CGCGgCGUGgCCa- -3'
miRNA:   3'- -UGGU-AGUGUUGUaGCGCgGCAC-GGac -5'
6967 3' -55.2 NC_001875.2 + 7359 0.69 0.773114
Target:  5'- aACCAUCAUgugUAUCGaGCCGUacaGCCUGg -3'
miRNA:   3'- -UGGUAGUGuu-GUAGCgCGGCA---CGGAC- -5'
6967 3' -55.2 NC_001875.2 + 20023 0.69 0.773114
Target:  5'- aGCCGUCACGcggaGCAgccagGCGCCGUcgGCCg- -3'
miRNA:   3'- -UGGUAGUGU----UGUag---CGCGGCA--CGGac -5'
6967 3' -55.2 NC_001875.2 + 14504 0.69 0.763488
Target:  5'- cGCCGguUCGCccGCGcCGCGCCGUGUCa- -3'
miRNA:   3'- -UGGU--AGUGu-UGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 16253 0.69 0.763488
Target:  5'- gGCCGUCACGcgcguGCGUCaCGUgGUGCCc- -3'
miRNA:   3'- -UGGUAGUGU-----UGUAGcGCGgCACGGac -5'
6967 3' -55.2 NC_001875.2 + 11773 0.69 0.753741
Target:  5'- gUCAUCGCcAACcUCGCGgCGcGCCUGa -3'
miRNA:   3'- uGGUAGUG-UUGuAGCGCgGCaCGGAC- -5'
6967 3' -55.2 NC_001875.2 + 101093 0.69 0.753741
Target:  5'- aGCUAUacaGCGACAgCGUGCaCGUGCCa- -3'
miRNA:   3'- -UGGUAg--UGUUGUaGCGCG-GCACGGac -5'
6967 3' -55.2 NC_001875.2 + 69214 0.69 0.743882
Target:  5'- gGCCAguacgcuuguUCggGCGACG-CGCGCUGUGCCg- -3'
miRNA:   3'- -UGGU----------AG--UGUUGUaGCGCGGCACGGac -5'
6967 3' -55.2 NC_001875.2 + 22834 0.69 0.743882
Target:  5'- cACCGUCggcggcACGACGUaCGCGUCcaGCCUGg -3'
miRNA:   3'- -UGGUAG------UGUUGUA-GCGCGGcaCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.