miRNA display CGI


Results 21 - 40 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 5' -61.8 NC_001875.2 + 121429 0.66 0.595201
Target:  5'- -gUUGGguaguGCAGCGgG-UGCCGCGCCa- -3'
miRNA:   3'- aaGACC-----UGUCGCgCuGCGGCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 9791 0.66 0.595201
Target:  5'- aUCcGGGCAcuGCGCGugcacaguaACGuuGgGCCGGa -3'
miRNA:   3'- aAGaCCUGU--CGCGC---------UGCggCgCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 9038 0.66 0.595201
Target:  5'- gUUUGGAgccgcCGGcCGCGcCGguuuCCGCGCCGGu -3'
miRNA:   3'- aAGACCU-----GUC-GCGCuGC----GGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 91445 0.66 0.595201
Target:  5'- -gCUGagcGGCGGCGCGugGgCGCGCa-- -3'
miRNA:   3'- aaGAC---CUGUCGCGCugCgGCGCGgcc -5'
6967 5' -61.8 NC_001875.2 + 122128 0.66 0.595201
Target:  5'- cUUCgGGcGCGGCGCGGcCGgCGCGCaCGa -3'
miRNA:   3'- -AAGaCC-UGUCGCGCU-GCgGCGCG-GCc -5'
6967 5' -61.8 NC_001875.2 + 47621 0.66 0.595201
Target:  5'- -cCUGGACgAGCGCG-CGCgGCccuacuaCCGGc -3'
miRNA:   3'- aaGACCUG-UCGCGCuGCGgCGc------GGCC- -5'
6967 5' -61.8 NC_001875.2 + 38635 0.66 0.594212
Target:  5'- ---gGGACAGU--GACGCCGCguauugcgcgcugGCCGGa -3'
miRNA:   3'- aagaCCUGUCGcgCUGCGGCG-------------CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 95404 0.66 0.585324
Target:  5'- -cCUGGACuuuaagcaccAGCcCGAcacCGCgGCGCCGGc -3'
miRNA:   3'- aaGACCUG----------UCGcGCU---GCGgCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 69483 0.66 0.585324
Target:  5'- -cCUGG-C-GCGCGacccaaacugGCGCCGCGCCc- -3'
miRNA:   3'- aaGACCuGuCGCGC----------UGCGGCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 67166 0.66 0.585324
Target:  5'- ---gGGACAGCGUggugGACaCCGCgGUCGGg -3'
miRNA:   3'- aagaCCUGUCGCG----CUGcGGCG-CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 75573 0.66 0.585324
Target:  5'- -gUUGGugAUAGCGCuGGCGUCGgCGUCGGc -3'
miRNA:   3'- aaGACC--UGUCGCG-CUGCGGC-GCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 100789 0.66 0.585324
Target:  5'- ---cGGcACAGUuucCGACguacgGCCGCGCCGGg -3'
miRNA:   3'- aagaCC-UGUCGc--GCUG-----CGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 59624 0.66 0.585324
Target:  5'- ---cGGAuUGGCG-GACGCCGCGUCGc -3'
miRNA:   3'- aagaCCU-GUCGCgCUGCGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 50016 0.66 0.582367
Target:  5'- ---gGGGC-GCGCGugGUCGCcgggcggcgaggcgGCCGGc -3'
miRNA:   3'- aagaCCUGuCGCGCugCGGCG--------------CGGCC- -5'
6967 5' -61.8 NC_001875.2 + 42293 0.67 0.579414
Target:  5'- -aCUGGGCAccCGCGGCGCCaaguacagaucgagcGCGCCc- -3'
miRNA:   3'- aaGACCUGUc-GCGCUGCGG---------------CGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 108752 0.67 0.57548
Target:  5'- ---gGGGCAGCugcacGCGGCGCgGguUGCCGGu -3'
miRNA:   3'- aagaCCUGUCG-----CGCUGCGgC--GCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 53678 0.67 0.57548
Target:  5'- aUCaaGACGGCGCcGCGCaGCGCCa- -3'
miRNA:   3'- aAGacCUGUCGCGcUGCGgCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 18267 0.67 0.565673
Target:  5'- -gCUGGcccaAUGGCGCGccgugcGCGaCCGCGCCGu -3'
miRNA:   3'- aaGACC----UGUCGCGC------UGC-GGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 108572 0.67 0.565673
Target:  5'- ---cGcGGCGGUGCuGGCGCUGCGCUGc -3'
miRNA:   3'- aagaC-CUGUCGCG-CUGCGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 43996 0.67 0.565673
Target:  5'- ---cGGACAGCcCGacggGCGCCGUGCCc- -3'
miRNA:   3'- aagaCCUGUCGcGC----UGCGGCGCGGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.