miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6968 3' -55.4 NC_001875.2 + 91874 0.66 0.919262
Target:  5'- aGGGcgcCUG-CUGGUGCGgcGGCGGGuCGg -3'
miRNA:   3'- gCCCau-GACgGACCACGU--UUGCCU-GC- -5'
6968 3' -55.4 NC_001875.2 + 71693 0.66 0.919262
Target:  5'- ---aUGCgGCgUGGUGCAcGACGGACa -3'
miRNA:   3'- gcccAUGaCGgACCACGU-UUGCCUGc -5'
6968 3' -55.4 NC_001875.2 + 119745 0.66 0.912239
Target:  5'- uGGuGUACcGCCaaagucgccgccGGUGCGucuGACGGGCGa -3'
miRNA:   3'- gCC-CAUGaCGGa-----------CCACGU---UUGCCUGC- -5'
6968 3' -55.4 NC_001875.2 + 123125 0.66 0.894506
Target:  5'- aCGaGGUACUGCUcgccguUGGaGCAAACaaGGACc -3'
miRNA:   3'- -GC-CCAUGACGG------ACCaCGUUUG--CCUGc -5'
6968 3' -55.4 NC_001875.2 + 54711 0.68 0.84239
Target:  5'- --uGUACUGCCUGGc---GACGGGCGu -3'
miRNA:   3'- gccCAUGACGGACCacguUUGCCUGC- -5'
6968 3' -55.4 NC_001875.2 + 43834 0.68 0.834114
Target:  5'- gCGGGcguugGCUgGCUUGGcUGCugcGCGGGCGu -3'
miRNA:   3'- -GCCCa----UGA-CGGACC-ACGuu-UGCCUGC- -5'
6968 3' -55.4 NC_001875.2 + 43795 0.68 0.834114
Target:  5'- gCGGGcguugGCUgGCUUGGcUGCugcGCGGGCGu -3'
miRNA:   3'- -GCCCa----UGA-CGGACC-ACGuu-UGCCUGC- -5'
6968 3' -55.4 NC_001875.2 + 1913 0.68 0.817008
Target:  5'- uCGGGUGCgcacgcGCUUGaaaggaguGUGUAAAUGGACa -3'
miRNA:   3'- -GCCCAUGa-----CGGAC--------CACGUUUGCCUGc -5'
6968 3' -55.4 NC_001875.2 + 116797 0.68 0.808194
Target:  5'- gGGGUACa-CCUGGUGCGAGuugagcuggucUGGAUa -3'
miRNA:   3'- gCCCAUGacGGACCACGUUU-----------GCCUGc -5'
6968 3' -55.4 NC_001875.2 + 43741 0.68 0.808194
Target:  5'- aCGGGcguugGCUgGCUUGGcUGCugcGCGGGCGu -3'
miRNA:   3'- -GCCCa----UGA-CGGACC-ACGuu-UGCCUGC- -5'
6968 3' -55.4 NC_001875.2 + 52204 0.69 0.790087
Target:  5'- uGGGcgACUGCgCgccGUGCAAACuGGACGc -3'
miRNA:   3'- gCCCa-UGACG-Gac-CACGUUUG-CCUGC- -5'
6968 3' -55.4 NC_001875.2 + 108160 0.69 0.771401
Target:  5'- uGGGccGCaGCCUGGUcguGCAcACGGACc -3'
miRNA:   3'- gCCCa-UGaCGGACCA---CGUuUGCCUGc -5'
6968 3' -55.4 NC_001875.2 + 49352 0.69 0.771401
Target:  5'- uGGGcgGCggGCCgUGGUGCAAcauGCGGcgGCGg -3'
miRNA:   3'- gCCCa-UGa-CGG-ACCACGUU---UGCC--UGC- -5'
6968 3' -55.4 NC_001875.2 + 35857 0.7 0.722632
Target:  5'- aGGGUACUGCaC-GGcGCGcuCGGACa -3'
miRNA:   3'- gCCCAUGACG-GaCCaCGUuuGCCUGc -5'
6968 3' -55.4 NC_001875.2 + 72576 0.74 0.489377
Target:  5'- gCGGGcGCUGCg-GGUGCGGgcgcuGCGGGCGc -3'
miRNA:   3'- -GCCCaUGACGgaCCACGUU-----UGCCUGC- -5'
6968 3' -55.4 NC_001875.2 + 78385 0.76 0.398017
Target:  5'- gCGGGUACUGCUUGGU-CAAAaugUGGugGu -3'
miRNA:   3'- -GCCCAUGACGGACCAcGUUU---GCCugC- -5'
6968 3' -55.4 NC_001875.2 + 74397 1.09 0.002728
Target:  5'- gCGGGUACUGCCUGGUGCAAACGGACGa -3'
miRNA:   3'- -GCCCAUGACGGACCACGUUUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.