miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6969 5' -43.6 NC_001875.2 + 31824 0.66 0.999999
Target:  5'- cGCAACAGuGCACCAgGUUUg------ -3'
miRNA:   3'- aUGUUGUU-CGUGGUgCAAAacaaacu -5'
6969 5' -43.6 NC_001875.2 + 21204 0.66 0.999999
Target:  5'- cACGGCcAGCGCCACcagGUUgUGUUUa- -3'
miRNA:   3'- aUGUUGuUCGUGGUG---CAAaACAAAcu -5'
6969 5' -43.6 NC_001875.2 + 41465 0.66 0.999999
Target:  5'- uUGCGGCGcGCGCgGCGUgucUUGUgUGGu -3'
miRNA:   3'- -AUGUUGUuCGUGgUGCAa--AACAaACU- -5'
6969 5' -43.6 NC_001875.2 + 14828 0.66 0.999999
Target:  5'- -uCAGCGcGC-CCugGUUUUGaUUGAa -3'
miRNA:   3'- auGUUGUuCGuGGugCAAAACaAACU- -5'
6969 5' -43.6 NC_001875.2 + 116280 0.66 0.999999
Target:  5'- cUGCAGCAuAGCACCGgGUUgcUGUa--- -3'
miRNA:   3'- -AUGUUGU-UCGUGGUgCAAa-ACAaacu -5'
6969 5' -43.6 NC_001875.2 + 103008 0.66 0.999999
Target:  5'- gUGCGGCAAGUgcgcugcgggcgugACCACGUgccccGUUUGc -3'
miRNA:   3'- -AUGUUGUUCG--------------UGGUGCAaaa--CAAACu -5'
6969 5' -43.6 NC_001875.2 + 105549 0.66 0.999998
Target:  5'- gGCGugAcGC-CCACGggcgUGUUUGAc -3'
miRNA:   3'- aUGUugUuCGuGGUGCaaa-ACAAACU- -5'
6969 5' -43.6 NC_001875.2 + 102431 0.66 0.999998
Target:  5'- gGCGACGAggugcGCugCGCGUUUUGc---- -3'
miRNA:   3'- aUGUUGUU-----CGugGUGCAAAACaaacu -5'
6969 5' -43.6 NC_001875.2 + 23575 0.66 0.999998
Target:  5'- cACGagcGCGGGCACCGCGUgcUUGg---- -3'
miRNA:   3'- aUGU---UGUUCGUGGUGCAa-AACaaacu -5'
6969 5' -43.6 NC_001875.2 + 98057 0.66 0.999998
Target:  5'- aUGCugauCGAGCGCCACaacucGUUUGAg -3'
miRNA:   3'- -AUGuu--GUUCGUGGUGcaaaaCAAACU- -5'
6969 5' -43.6 NC_001875.2 + 985 0.66 0.999998
Target:  5'- gGCGACGcuCGCCACGUUUcuaauccUGUaUGGc -3'
miRNA:   3'- aUGUUGUucGUGGUGCAAA-------ACAaACU- -5'
6969 5' -43.6 NC_001875.2 + 24281 0.66 0.999998
Target:  5'- cUGCAGCgGAGCaugcuccGCCGCGUUUggauucUGUUUGc -3'
miRNA:   3'- -AUGUUG-UUCG-------UGGUGCAAA------ACAAACu -5'
6969 5' -43.6 NC_001875.2 + 83030 0.66 0.999998
Target:  5'- cGCAGCGAguGCGCCACGUg-------- -3'
miRNA:   3'- aUGUUGUU--CGUGGUGCAaaacaaacu -5'
6969 5' -43.6 NC_001875.2 + 92155 0.66 0.999998
Target:  5'- -cCGGCAuauuGCACCGCGggcUUUGUUUu- -3'
miRNA:   3'- auGUUGUu---CGUGGUGCa--AAACAAAcu -5'
6969 5' -43.6 NC_001875.2 + 3787 0.66 0.999996
Target:  5'- aGCAACAuuAGCACCAUacaUUGUUUa- -3'
miRNA:   3'- aUGUUGU--UCGUGGUGcaaAACAAAcu -5'
6969 5' -43.6 NC_001875.2 + 124260 0.66 0.999996
Target:  5'- gACGACAGGCGgCGCGUUg------- -3'
miRNA:   3'- aUGUUGUUCGUgGUGCAAaacaaacu -5'
6969 5' -43.6 NC_001875.2 + 117963 0.66 0.999996
Target:  5'- uUGCAGCGAGCGCCAaaaUGgccUGUUg-- -3'
miRNA:   3'- -AUGUUGUUCGUGGU---GCaaaACAAacu -5'
6969 5' -43.6 NC_001875.2 + 123865 0.66 0.999996
Target:  5'- -uCAACuAAGCACCGCaauggUUGUUUGc -3'
miRNA:   3'- auGUUG-UUCGUGGUGcaa--AACAAACu -5'
6969 5' -43.6 NC_001875.2 + 94141 0.66 0.999996
Target:  5'- gACAACGGGCACacaaucaGCGUcUUGUg--- -3'
miRNA:   3'- aUGUUGUUCGUGg------UGCAaAACAaacu -5'
6969 5' -43.6 NC_001875.2 + 26496 0.67 0.999994
Target:  5'- cGCAAUAGGCGgCCGCGUUgaccgucaacagUGUgcacaUUGAg -3'
miRNA:   3'- aUGUUGUUCGU-GGUGCAAa-----------ACA-----AACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.