miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
697 5' -56 AC_000018.1 + 18359 0.66 0.598002
Target:  5'- --uCUGcGGCGccuGUUCCCAAACCUGucgcuACCa -3'
miRNA:   3'- ucuGGC-CCGC---UAAGGGUUUGGGC-----UGG- -5'
697 5' -56 AC_000018.1 + 10699 0.66 0.598002
Target:  5'- cAGACuaCGGGCGcgagccacUCCCAGcCCCGAg- -3'
miRNA:   3'- -UCUG--GCCCGCua------AGGGUUuGGGCUgg -5'
697 5' -56 AC_000018.1 + 23381 0.66 0.553779
Target:  5'- -cACCGGGgGGUagCUgAAGCCCacGGCCa -3'
miRNA:   3'- ucUGGCCCgCUAa-GGgUUUGGG--CUGG- -5'
697 5' -56 AC_000018.1 + 4584 0.67 0.510576
Target:  5'- cAGAUUGGGgGAUgaaaguUCCCucuGGCCCGGg- -3'
miRNA:   3'- -UCUGGCCCgCUA------AGGGu--UUGGGCUgg -5'
697 5' -56 AC_000018.1 + 8439 0.67 0.510576
Target:  5'- -cACCGGGCGGcaggggcggCUCgGGACCCGGCg -3'
miRNA:   3'- ucUGGCCCGCUaa-------GGG-UUUGGGCUGg -5'
697 5' -56 AC_000018.1 + 16588 0.67 0.509514
Target:  5'- uGGCgCGGGCGcaaagugcgucaaGUgCUCAGACCCGggACCa -3'
miRNA:   3'- uCUG-GCCCGC-------------UAaGGGUUUGGGC--UGG- -5'
697 5' -56 AC_000018.1 + 10722 0.67 0.489502
Target:  5'- cGGAUCGGcCGGUUUCCGcgacguuucuaaGACCCcGCCa -3'
miRNA:   3'- -UCUGGCCcGCUAAGGGU------------UUGGGcUGG- -5'
697 5' -56 AC_000018.1 + 18783 0.68 0.458681
Target:  5'- -uGCaCGGGCGAacugCaCCAGACCCgGACUc -3'
miRNA:   3'- ucUG-GCCCGCUaa--G-GGUUUGGG-CUGG- -5'
697 5' -56 AC_000018.1 + 11056 0.7 0.372998
Target:  5'- -cGCuCGGGCGAUggugcgCCCAGGCgCG-CCa -3'
miRNA:   3'- ucUG-GCCCGCUAa-----GGGUUUGgGCuGG- -5'
697 5' -56 AC_000018.1 + 11328 0.7 0.372998
Target:  5'- -cGCuCGGGCGAUggugcgCCCAGGCgCG-CCa -3'
miRNA:   3'- ucUG-GCCCGCUAa-----GGGUUUGgGCuGG- -5'
697 5' -56 AC_000018.1 + 26280 1.13 0.000307
Target:  5'- gAGACCGGGCGAUUCCCAAACCCGACCa -3'
miRNA:   3'- -UCUGGCCCGCUAAGGGUUUGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.