Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
697 | 5' | -56 | AC_000018.1 | + | 18359 | 0.66 | 0.598002 |
Target: 5'- --uCUGcGGCGccuGUUCCCAAACCUGucgcuACCa -3' miRNA: 3'- ucuGGC-CCGC---UAAGGGUUUGGGC-----UGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 10699 | 0.66 | 0.598002 |
Target: 5'- cAGACuaCGGGCGcgagccacUCCCAGcCCCGAg- -3' miRNA: 3'- -UCUG--GCCCGCua------AGGGUUuGGGCUgg -5' |
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697 | 5' | -56 | AC_000018.1 | + | 23381 | 0.66 | 0.553779 |
Target: 5'- -cACCGGGgGGUagCUgAAGCCCacGGCCa -3' miRNA: 3'- ucUGGCCCgCUAa-GGgUUUGGG--CUGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 4584 | 0.67 | 0.510576 |
Target: 5'- cAGAUUGGGgGAUgaaaguUCCCucuGGCCCGGg- -3' miRNA: 3'- -UCUGGCCCgCUA------AGGGu--UUGGGCUgg -5' |
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697 | 5' | -56 | AC_000018.1 | + | 8439 | 0.67 | 0.510576 |
Target: 5'- -cACCGGGCGGcaggggcggCUCgGGACCCGGCg -3' miRNA: 3'- ucUGGCCCGCUaa-------GGG-UUUGGGCUGg -5' |
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697 | 5' | -56 | AC_000018.1 | + | 16588 | 0.67 | 0.509514 |
Target: 5'- uGGCgCGGGCGcaaagugcgucaaGUgCUCAGACCCGggACCa -3' miRNA: 3'- uCUG-GCCCGC-------------UAaGGGUUUGGGC--UGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 10722 | 0.67 | 0.489502 |
Target: 5'- cGGAUCGGcCGGUUUCCGcgacguuucuaaGACCCcGCCa -3' miRNA: 3'- -UCUGGCCcGCUAAGGGU------------UUGGGcUGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 18783 | 0.68 | 0.458681 |
Target: 5'- -uGCaCGGGCGAacugCaCCAGACCCgGACUc -3' miRNA: 3'- ucUG-GCCCGCUaa--G-GGUUUGGG-CUGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 11056 | 0.7 | 0.372998 |
Target: 5'- -cGCuCGGGCGAUggugcgCCCAGGCgCG-CCa -3' miRNA: 3'- ucUG-GCCCGCUAa-----GGGUUUGgGCuGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 11328 | 0.7 | 0.372998 |
Target: 5'- -cGCuCGGGCGAUggugcgCCCAGGCgCG-CCa -3' miRNA: 3'- ucUG-GCCCGCUAa-----GGGUUUGgGCuGG- -5' |
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697 | 5' | -56 | AC_000018.1 | + | 26280 | 1.13 | 0.000307 |
Target: 5'- gAGACCGGGCGAUUCCCAAACCCGACCa -3' miRNA: 3'- -UCUGGCCCGCUAAGGGUUUGGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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