miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6970 3' -52.8 NC_001875.2 + 18694 0.66 0.97504
Target:  5'- --aCGUaCAAGGCGGCGc--UGGUGCa -3'
miRNA:   3'- ggaGCGcGUUUCGUCGCuaaGCCACG- -5'
6970 3' -52.8 NC_001875.2 + 1888 0.66 0.97504
Target:  5'- ---aGUGCGucAGCGGCGAcccugcuuUUCgGGUGCg -3'
miRNA:   3'- ggagCGCGUu-UCGUCGCU--------AAG-CCACG- -5'
6970 3' -52.8 NC_001875.2 + 94268 0.66 0.973426
Target:  5'- gCUCGCGCc-GGCGcauccacucgaugccGCGuUUCuGGUGCu -3'
miRNA:   3'- gGAGCGCGuuUCGU---------------CGCuAAG-CCACG- -5'
6970 3' -52.8 NC_001875.2 + 72605 0.66 0.972309
Target:  5'- gCUUCGCGCucGGCguuaagcuuGGCGAcguaaUCGGcgGCg -3'
miRNA:   3'- -GGAGCGCGuuUCG---------UCGCUa----AGCCa-CG- -5'
6970 3' -52.8 NC_001875.2 + 113556 0.66 0.972309
Target:  5'- --gCGCGCGAAGCGGCcuu---GUGCg -3'
miRNA:   3'- ggaGCGCGUUUCGUCGcuaagcCACG- -5'
6970 3' -52.8 NC_001875.2 + 89154 0.66 0.972309
Target:  5'- --cCGCGCGccGC-GCGGUUUcGUGCa -3'
miRNA:   3'- ggaGCGCGUuuCGuCGCUAAGcCACG- -5'
6970 3' -52.8 NC_001875.2 + 84325 0.66 0.972309
Target:  5'- gCCU-GCGguaccCGGAGCGGCGAguggCGGaGCg -3'
miRNA:   3'- -GGAgCGC-----GUUUCGUCGCUaa--GCCaCG- -5'
6970 3' -52.8 NC_001875.2 + 50980 0.66 0.972309
Target:  5'- -gUUGCGgAAAGCGGCaaagCGGUGg -3'
miRNA:   3'- ggAGCGCgUUUCGUCGcuaaGCCACg -5'
6970 3' -52.8 NC_001875.2 + 112831 0.66 0.972309
Target:  5'- --aCGUGCAAAGC-GCGuugCGGccUGCg -3'
miRNA:   3'- ggaGCGCGUUUCGuCGCuaaGCC--ACG- -5'
6970 3' -52.8 NC_001875.2 + 89796 0.66 0.972309
Target:  5'- --gUGCGCGAacgcagcgcgGGCGGCaGAUcgUGGUGCc -3'
miRNA:   3'- ggaGCGCGUU----------UCGUCG-CUAa-GCCACG- -5'
6970 3' -52.8 NC_001875.2 + 59478 0.66 0.972025
Target:  5'- -aUUGCGCAGcgcGGCcgagacaAGCGcgUCGaGUGCc -3'
miRNA:   3'- ggAGCGCGUU---UCG-------UCGCuaAGC-CACG- -5'
6970 3' -52.8 NC_001875.2 + 54982 0.66 0.971449
Target:  5'- gCUCGCGCuGGGCgccuuucguuucguGGCGAUUuugaccagcgCGGcGCg -3'
miRNA:   3'- gGAGCGCGuUUCG--------------UCGCUAA----------GCCaCG- -5'
6970 3' -52.8 NC_001875.2 + 70233 0.66 0.969369
Target:  5'- uUCUCGC-CAAgccAGCGcGCGGUgaUCGG-GCg -3'
miRNA:   3'- -GGAGCGcGUU---UCGU-CGCUA--AGCCaCG- -5'
6970 3' -52.8 NC_001875.2 + 68156 0.66 0.969369
Target:  5'- aCCUCGUGCGcgccccucauuAAGCAGUGcucguuUUCGGc-- -3'
miRNA:   3'- -GGAGCGCGU-----------UUCGUCGCu-----AAGCCacg -5'
6970 3' -52.8 NC_001875.2 + 77412 0.66 0.969369
Target:  5'- -aUUGaaaaGCAGGGCAacgcGCGcgUUGGUGCc -3'
miRNA:   3'- ggAGCg---CGUUUCGU----CGCuaAGCCACG- -5'
6970 3' -52.8 NC_001875.2 + 109642 0.66 0.969369
Target:  5'- --aCGCGCugcccaacGCGGCGucauUUCGcGUGCa -3'
miRNA:   3'- ggaGCGCGuuu-----CGUCGCu---AAGC-CACG- -5'
6970 3' -52.8 NC_001875.2 + 113421 0.66 0.966214
Target:  5'- gCCUCGCGCcGAGUAcGCaauggGAguUUUGGUGa -3'
miRNA:   3'- -GGAGCGCGuUUCGU-CG-----CU--AAGCCACg -5'
6970 3' -52.8 NC_001875.2 + 127952 0.66 0.966214
Target:  5'- gCCUUGUacagccugcccaGCuuGGCGGCG---CGGUGCu -3'
miRNA:   3'- -GGAGCG------------CGuuUCGUCGCuaaGCCACG- -5'
6970 3' -52.8 NC_001875.2 + 43029 0.66 0.962835
Target:  5'- --cCGCGCGccGCGGCGcg-CGG-GCu -3'
miRNA:   3'- ggaGCGCGUuuCGUCGCuaaGCCaCG- -5'
6970 3' -52.8 NC_001875.2 + 95218 0.66 0.962835
Target:  5'- gCUCGUGU---GCcGCGAUcggUGGUGCa -3'
miRNA:   3'- gGAGCGCGuuuCGuCGCUAa--GCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.