miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6970 5' -52.4 NC_001875.2 + 38522 0.66 0.974038
Target:  5'- gUCGCAGugGGuggaguuuuuGCAGCUCGugGccgGGu -3'
miRNA:   3'- -GGCGUUugCCu---------CGUCGAGUugCa--CUu -5'
6970 5' -52.4 NC_001875.2 + 91429 0.66 0.974038
Target:  5'- gCCGCAgcucgcuguAGCuGAGCGGCggcGCGUGGg -3'
miRNA:   3'- -GGCGU---------UUGcCUCGUCGaguUGCACUu -5'
6970 5' -52.4 NC_001875.2 + 130046 0.66 0.974038
Target:  5'- uCCGCcGACGGAaaugGCGGCggCGGCGg--- -3'
miRNA:   3'- -GGCGuUUGCCU----CGUCGa-GUUGCacuu -5'
6970 5' -52.4 NC_001875.2 + 47983 0.66 0.972351
Target:  5'- gUGCGAGCGGGGCgucgAGCcgcccuggaaccagaUCGugGUGGc -3'
miRNA:   3'- gGCGUUUGCCUCG----UCG---------------AGUugCACUu -5'
6970 5' -52.4 NC_001875.2 + 116585 0.66 0.971183
Target:  5'- gCCGC---CGGuGguGCgCAGCGUGAu -3'
miRNA:   3'- -GGCGuuuGCCuCguCGaGUUGCACUu -5'
6970 5' -52.4 NC_001875.2 + 29278 0.66 0.971183
Target:  5'- aCCGCGccGGCGGGGCGcGgUCGugugGCGUGu- -3'
miRNA:   3'- -GGCGU--UUGCCUCGU-CgAGU----UGCACuu -5'
6970 5' -52.4 NC_001875.2 + 24280 0.66 0.971183
Target:  5'- gCUGC-AGCGGAGCAuGCUCcgccGCGUuuGGAu -3'
miRNA:   3'- -GGCGuUUGCCUCGU-CGAGu---UGCA--CUU- -5'
6970 5' -52.4 NC_001875.2 + 33429 0.66 0.971183
Target:  5'- uCCGCAAugucguGCGuGAGCGcGUUCAGCGcGGc -3'
miRNA:   3'- -GGCGUU------UGC-CUCGU-CGAGUUGCaCUu -5'
6970 5' -52.4 NC_001875.2 + 126855 0.66 0.971183
Target:  5'- gCCGCAcagcAGCGaGGCGGCUUugcaguuaAugGUGGAg -3'
miRNA:   3'- -GGCGU----UUGCcUCGUCGAG--------UugCACUU- -5'
6970 5' -52.4 NC_001875.2 + 32817 0.66 0.968109
Target:  5'- uCgGCGAACGGcGCcGCUUgcgAGCGUGGc -3'
miRNA:   3'- -GgCGUUUGCCuCGuCGAG---UUGCACUu -5'
6970 5' -52.4 NC_001875.2 + 130094 0.66 0.964809
Target:  5'- uCCGCcGACGGAaaugGCGGCggcggCGGCGcGAc -3'
miRNA:   3'- -GGCGuUUGCCU----CGUCGa----GUUGCaCUu -5'
6970 5' -52.4 NC_001875.2 + 762 0.66 0.964809
Target:  5'- uUGCAcAUGGGGCAGCUgaCGGCGgcgcgcgGAAc -3'
miRNA:   3'- gGCGUuUGCCUCGUCGA--GUUGCa------CUU- -5'
6970 5' -52.4 NC_001875.2 + 59714 0.66 0.964809
Target:  5'- -gGCGAGCGaGcAGCGGCUC-GCGcUGGAg -3'
miRNA:   3'- ggCGUUUGC-C-UCGUCGAGuUGC-ACUU- -5'
6970 5' -52.4 NC_001875.2 + 74042 0.66 0.961276
Target:  5'- gCCGCGcuaaaAACcGcGCuGCUCGGCGUGGAu -3'
miRNA:   3'- -GGCGU-----UUGcCuCGuCGAGUUGCACUU- -5'
6970 5' -52.4 NC_001875.2 + 34610 0.66 0.961276
Target:  5'- gCGCAAACaGGAGCGGCccgaggaCAAgGUGu- -3'
miRNA:   3'- gGCGUUUG-CCUCGUCGa------GUUgCACuu -5'
6970 5' -52.4 NC_001875.2 + 28939 0.66 0.961276
Target:  5'- uCCGUucAACGGccGGCcGCUCAAUGUGc- -3'
miRNA:   3'- -GGCGu-UUGCC--UCGuCGAGUUGCACuu -5'
6970 5' -52.4 NC_001875.2 + 11568 0.66 0.961276
Target:  5'- gCCGCcgAAGCggGGAGCGGUgugCGccuACGUGAGa -3'
miRNA:   3'- -GGCG--UUUG--CCUCGUCGa--GU---UGCACUU- -5'
6970 5' -52.4 NC_001875.2 + 108735 0.66 0.957506
Target:  5'- gCGCAGcggccuuugGCGGGGCAGCUgcacgCGGCGcGGGu -3'
miRNA:   3'- gGCGUU---------UGCCUCGUCGA-----GUUGCaCUU- -5'
6970 5' -52.4 NC_001875.2 + 76919 0.67 0.953492
Target:  5'- cCCaGCGacGACGaGAGCGGCUcCAGCGaGGAc -3'
miRNA:   3'- -GG-CGU--UUGC-CUCGUCGA-GUUGCaCUU- -5'
6970 5' -52.4 NC_001875.2 + 47260 0.67 0.95224
Target:  5'- gUGCAccAGCGGGucacgaccgaggacGC-GCUCGACGUGGAg -3'
miRNA:   3'- gGCGU--UUGCCU--------------CGuCGAGUUGCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.