miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6971 3' -62.3 NC_001875.2 + 310 0.67 0.510287
Target:  5'- cGGGCGcgcuuUGCGC-CGCuuCCAgccgcugcaccGCGCGCCGc -3'
miRNA:   3'- uUCCGC-----ACGCGaGCG--GGU-----------UGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 566 0.71 0.310518
Target:  5'- -uGGCGuUGUGCaagUCGUUCAACGCGUCGc -3'
miRNA:   3'- uuCCGC-ACGCG---AGCGGGUUGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 1742 0.66 0.558631
Target:  5'- -cGGCGUGUGCUagcggUGCCuCAGCgGCGaCCc -3'
miRNA:   3'- uuCCGCACGCGA-----GCGG-GUUG-CGC-GGc -5'
6971 3' -62.3 NC_001875.2 + 2872 0.7 0.339344
Target:  5'- cGAGcGCGUcaucCGCUCGCCCAGCucaCGCCu -3'
miRNA:   3'- -UUC-CGCAc---GCGAGCGGGUUGc--GCGGc -5'
6971 3' -62.3 NC_001875.2 + 3060 0.76 0.151302
Target:  5'- aGAGGCGcgcagcgGCGCgccggggUCGCCCAcggcgugcACGCGCCGg -3'
miRNA:   3'- -UUCCGCa------CGCG-------AGCGGGU--------UGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 3656 0.72 0.277157
Target:  5'- -uGGCGUGUGUgcugCGCgCUuGCGCGCCa -3'
miRNA:   3'- uuCCGCACGCGa---GCG-GGuUGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 6915 0.67 0.491432
Target:  5'- ---aCGUGCGCUCGgCCGagggcguggaccGCGCGCUa -3'
miRNA:   3'- uuccGCACGCGAGCgGGU------------UGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 6949 0.74 0.184459
Target:  5'- -cGuGCGUGCGCcgcgacaUCGCCaCGGCGCGCUGc -3'
miRNA:   3'- uuC-CGCACGCG-------AGCGG-GUUGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 7001 0.68 0.463777
Target:  5'- uGGGUGUGCuGCUgGCCggCGGCGCGUa- -3'
miRNA:   3'- uUCCGCACG-CGAgCGG--GUUGCGCGgc -5'
6971 3' -62.3 NC_001875.2 + 7104 0.66 0.578345
Target:  5'- --aGCGcGCGCUgGCCgAcauugaccgccACGCGCCGc -3'
miRNA:   3'- uucCGCaCGCGAgCGGgU-----------UGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 7564 0.71 0.317546
Target:  5'- aAAGGCG-GCGggucgUCGacgaCCAACGCGCCGc -3'
miRNA:   3'- -UUCCGCaCGCg----AGCg---GGUUGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 8513 0.82 0.058392
Target:  5'- aAGGGCGUGCGCUCuGCCU-GCGCGUCGu -3'
miRNA:   3'- -UUCCGCACGCGAG-CGGGuUGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 9635 0.66 0.548843
Target:  5'- --uGCGUGCGCgCGCCguGCGUGUUu -3'
miRNA:   3'- uucCGCACGCGaGCGGguUGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 10633 0.67 0.50082
Target:  5'- -cGGcCG-GUGC-CGCCCAGCGUGCa- -3'
miRNA:   3'- uuCC-GCaCGCGaGCGGGUUGCGCGgc -5'
6971 3' -62.3 NC_001875.2 + 10883 0.66 0.588261
Target:  5'- -cGGUG-GCGCUgcCGCgCAACGUGuuGg -3'
miRNA:   3'- uuCCGCaCGCGA--GCGgGUUGCGCggC- -5'
6971 3' -62.3 NC_001875.2 + 11078 0.68 0.445799
Target:  5'- -uGGCGUgGCGCgCGCCCuggacACGgcCGCCGu -3'
miRNA:   3'- uuCCGCA-CGCGaGCGGGu----UGC--GCGGC- -5'
6971 3' -62.3 NC_001875.2 + 11159 0.71 0.310518
Target:  5'- gGAGGCGUaccGCGCgCGCaucgaCAaguuGCGCGCCGu -3'
miRNA:   3'- -UUCCGCA---CGCGaGCGg----GU----UGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 11916 0.68 0.45474
Target:  5'- -cGGCGagcagGUGUuuugCGCgCGGCGCGCCGa -3'
miRNA:   3'- uuCCGCa----CGCGa---GCGgGUUGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 12972 0.68 0.445799
Target:  5'- cGGGCGUGgGCUcCGCgCCGugGUGgCu -3'
miRNA:   3'- uUCCGCACgCGA-GCG-GGUugCGCgGc -5'
6971 3' -62.3 NC_001875.2 + 13083 0.71 0.296818
Target:  5'- cGGGCGUGagcagGC-CGCCCAccAUGUGCCGc -3'
miRNA:   3'- uUCCGCACg----CGaGCGGGU--UGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.