miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6971 5' -56.3 NC_001875.2 + 117966 0.66 0.866105
Target:  5'- cAGCGAgCGccaaaaUGGCCuGUUGCGCGCGCG-Ca -3'
miRNA:   3'- -UUGCU-GC------ACUGG-CAGUGCGCGUGCuG- -5'
6971 5' -56.3 NC_001875.2 + 119958 0.66 0.866105
Target:  5'- cGACGACcccuCCGUCGcCGCGCACa-- -3'
miRNA:   3'- -UUGCUGcacuGGCAGU-GCGCGUGcug -5'
6971 5' -56.3 NC_001875.2 + 119055 0.66 0.873528
Target:  5'- -cCGGCGUG--CG-CAUGUGCGCGGCg -3'
miRNA:   3'- uuGCUGCACugGCaGUGCGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 31538 0.66 0.889763
Target:  5'- cAGCGACGcgcucauUGugUauuguuugcgcgaagGUCGCGUGCACGAg -3'
miRNA:   3'- -UUGCUGC-------ACugG---------------CAGUGCGCGUGCUg -5'
6971 5' -56.3 NC_001875.2 + 5168 0.66 0.850626
Target:  5'- cGCaACGUGcUCGUCagcGCGUGCAUGGCg -3'
miRNA:   3'- uUGcUGCACuGGCAG---UGCGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 46019 0.66 0.864594
Target:  5'- cACGACGUG-CUGauuuugauucaaCACGCGCGCGcCg -3'
miRNA:   3'- uUGCUGCACuGGCa-----------GUGCGCGUGCuG- -5'
6971 5' -56.3 NC_001875.2 + 49466 0.66 0.880732
Target:  5'- cGGCGcCGUGGuuCCG-CGCGCGCcCGAg -3'
miRNA:   3'- -UUGCuGCACU--GGCaGUGCGCGuGCUg -5'
6971 5' -56.3 NC_001875.2 + 77936 0.66 0.863836
Target:  5'- cAACGGCGcgcccacaauuauuUGcGCCGcggCgGCGCGCACGACc -3'
miRNA:   3'- -UUGCUGC--------------AC-UGGCa--G-UGCGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 32423 0.66 0.866105
Target:  5'- cGCGGCGcUGGCCaacaauGCGCuGCGCGACc -3'
miRNA:   3'- uUGCUGC-ACUGGcag---UGCG-CGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 54959 0.66 0.887713
Target:  5'- cGCGcGCGUuugccgGACgCGUCGCucGCGCugGGCg -3'
miRNA:   3'- uUGC-UGCA------CUG-GCAGUG--CGCGugCUG- -5'
6971 5' -56.3 NC_001875.2 + 111811 0.66 0.873528
Target:  5'- cGACGGCGccUGGCUGcUC-CGCGUgACGGCu -3'
miRNA:   3'- -UUGCUGC--ACUGGC-AGuGCGCG-UGCUG- -5'
6971 5' -56.3 NC_001875.2 + 113675 0.66 0.858469
Target:  5'- cGCcACaGUGGCggCGUCGCGCGCGCcGCa -3'
miRNA:   3'- uUGcUG-CACUG--GCAGUGCGCGUGcUG- -5'
6971 5' -56.3 NC_001875.2 + 81804 0.66 0.850626
Target:  5'- cAGCGACGggccGGCCGccUCGC-CGCccgGCGACa -3'
miRNA:   3'- -UUGCUGCa---CUGGC--AGUGcGCG---UGCUG- -5'
6971 5' -56.3 NC_001875.2 + 89925 0.66 0.858469
Target:  5'- gGGCGGCGcGuCCGcgggccacuauUCGCGgGCAUGGCg -3'
miRNA:   3'- -UUGCUGCaCuGGC-----------AGUGCgCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 43330 0.66 0.858469
Target:  5'- -uCGGCGUGGuuGcCGcCGCGCACcACg -3'
miRNA:   3'- uuGCUGCACUggCaGU-GCGCGUGcUG- -5'
6971 5' -56.3 NC_001875.2 + 50357 0.66 0.880732
Target:  5'- -uUGGCGUcgGGCCG-CGCGCGcCACuGACc -3'
miRNA:   3'- uuGCUGCA--CUGGCaGUGCGC-GUG-CUG- -5'
6971 5' -56.3 NC_001875.2 + 74365 0.66 0.850626
Target:  5'- aGACGGCGUGcgcgGCCGcggCGCGUucagGCGCGGg -3'
miRNA:   3'- -UUGCUGCAC----UGGCa--GUGCG----CGUGCUg -5'
6971 5' -56.3 NC_001875.2 + 65435 0.66 0.873528
Target:  5'- -cCGGCGUGcACCG-CugGCGguCGGu -3'
miRNA:   3'- uuGCUGCAC-UGGCaGugCGCguGCUg -5'
6971 5' -56.3 NC_001875.2 + 41236 0.66 0.880732
Target:  5'- cACGGCcucGGCCGUCGCGUGCuACa-- -3'
miRNA:   3'- uUGCUGca-CUGGCAGUGCGCG-UGcug -5'
6971 5' -56.3 NC_001875.2 + 68560 0.66 0.866105
Target:  5'- cGCGGCGgcGGCgGUCGCGCaccGCGUGGCg -3'
miRNA:   3'- uUGCUGCa-CUGgCAGUGCG---CGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.