miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6972 5' -58 NC_001875.2 + 38631 0.66 0.822378
Target:  5'- aGUUgGGaCAGuG-ACGCCGCguaUUGCGCg -3'
miRNA:   3'- gCGGgCC-GUC-CaUGUGGCGa--AACGCG- -5'
6972 5' -58 NC_001875.2 + 41920 0.66 0.822378
Target:  5'- gGCCC-GCGGacGCGCCGCccuuuauaUGCGCg -3'
miRNA:   3'- gCGGGcCGUCcaUGUGGCGaa------ACGCG- -5'
6972 5' -58 NC_001875.2 + 42600 0.66 0.822378
Target:  5'- aGCUCGGCGcuGG-GCACCGCcaacaCGCa -3'
miRNA:   3'- gCGGGCCGU--CCaUGUGGCGaaac-GCG- -5'
6972 5' -58 NC_001875.2 + 36821 0.66 0.822378
Target:  5'- gCGCCgCGGCAGuUGCG-CGCcc-GCGCc -3'
miRNA:   3'- -GCGG-GCCGUCcAUGUgGCGaaaCGCG- -5'
6972 5' -58 NC_001875.2 + 117934 0.66 0.822378
Target:  5'- gGCCCGcucGCAGuagACGCCGUgacccgUUGCaGCg -3'
miRNA:   3'- gCGGGC---CGUCca-UGUGGCGa-----AACG-CG- -5'
6972 5' -58 NC_001875.2 + 47521 0.66 0.822378
Target:  5'- cCGCuCCGgguaccGCAGG--CGCCGCUacuagGCGCg -3'
miRNA:   3'- -GCG-GGC------CGUCCauGUGGCGAaa---CGCG- -5'
6972 5' -58 NC_001875.2 + 96303 0.66 0.822378
Target:  5'- gCGgCCGGguGGgcggccaGCACCGUg--GcCGCg -3'
miRNA:   3'- -GCgGGCCguCCa------UGUGGCGaaaC-GCG- -5'
6972 5' -58 NC_001875.2 + 57151 0.66 0.822378
Target:  5'- gCGCCaaCGGCGGGUcgaaaaACUGUUgaaaGCGCa -3'
miRNA:   3'- -GCGG--GCCGUCCAug----UGGCGAaa--CGCG- -5'
6972 5' -58 NC_001875.2 + 37905 0.66 0.819821
Target:  5'- gGCgCGGCAcugGCACCGCgcguguuggacgagGCGCa -3'
miRNA:   3'- gCGgGCCGUccaUGUGGCGaaa-----------CGCG- -5'
6972 5' -58 NC_001875.2 + 130329 0.66 0.818966
Target:  5'- gCGCCCgcacccaaaaGGCAGGgucgucgcugacGCACCGCUaaaaguagcacGCGCc -3'
miRNA:   3'- -GCGGG----------CCGUCCa-----------UGUGGCGAaa---------CGCG- -5'
6972 5' -58 NC_001875.2 + 43749 0.66 0.813798
Target:  5'- uGgCUGGCuuGGcUGCugCGCgggcgUUUGCGCa -3'
miRNA:   3'- gCgGGCCGu-CC-AUGugGCG-----AAACGCG- -5'
6972 5' -58 NC_001875.2 + 126324 0.66 0.813798
Target:  5'- gCGgCCGGCGuaaACugCGCgcgUGCGCc -3'
miRNA:   3'- -GCgGGCCGUccaUGugGCGaa-ACGCG- -5'
6972 5' -58 NC_001875.2 + 110170 0.66 0.813798
Target:  5'- uCGUCgGGCGGcGUcGCACUGCgcucguccGCGCu -3'
miRNA:   3'- -GCGGgCCGUC-CA-UGUGGCGaaa-----CGCG- -5'
6972 5' -58 NC_001875.2 + 43803 0.66 0.813798
Target:  5'- uGgCUGGCuuGGcUGCugCGCgggcgUUUGCGCg -3'
miRNA:   3'- gCgGGCCGu-CC-AUGugGCG-----AAACGCG- -5'
6972 5' -58 NC_001875.2 + 87300 0.66 0.813798
Target:  5'- aGCCCGGC----ACGCCGCgcgaCGCu -3'
miRNA:   3'- gCGGGCCGuccaUGUGGCGaaacGCG- -5'
6972 5' -58 NC_001875.2 + 23654 0.66 0.813798
Target:  5'- uCGCCgaGGCccAGGU-CAUCGCgguccgUGUGCa -3'
miRNA:   3'- -GCGGg-CCG--UCCAuGUGGCGaa----ACGCG- -5'
6972 5' -58 NC_001875.2 + 44475 0.66 0.813798
Target:  5'- gCGCgCuGCGGGUcuugaguuuccgACAUUggGCUUUGCGCg -3'
miRNA:   3'- -GCGgGcCGUCCA------------UGUGG--CGAAACGCG- -5'
6972 5' -58 NC_001875.2 + 36097 0.66 0.805055
Target:  5'- uCGCgCGGCAGc-ACGCgGCggcgGCGCc -3'
miRNA:   3'- -GCGgGCCGUCcaUGUGgCGaaa-CGCG- -5'
6972 5' -58 NC_001875.2 + 76582 0.66 0.805055
Target:  5'- uGCCCGGCAacgGCgACCGCaUUccauaUGUGCu -3'
miRNA:   3'- gCGGGCCGUccaUG-UGGCG-AA-----ACGCG- -5'
6972 5' -58 NC_001875.2 + 54172 0.66 0.805055
Target:  5'- gCGCUCGGaCAGcgGCGCUGCguugGCGUc -3'
miRNA:   3'- -GCGGGCC-GUCcaUGUGGCGaaa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.