miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6973 3' -56.8 NC_001875.2 + 57582 0.66 0.855703
Target:  5'- ---cGCGGCGUCGcGCUGucCagaaGCGUGg -3'
miRNA:   3'- uuuaUGCCGCAGU-CGACcuGg---CGCGC- -5'
6973 3' -56.8 NC_001875.2 + 73692 0.66 0.855703
Target:  5'- --cUGCGGCGgCuGCUGcGGCgGCuGCGg -3'
miRNA:   3'- uuuAUGCCGCaGuCGAC-CUGgCG-CGC- -5'
6973 3' -56.8 NC_001875.2 + 39085 0.66 0.850951
Target:  5'- ---cGCGGCGUCGuGCUGuGccaacgcugcaguuCCGCGCu -3'
miRNA:   3'- uuuaUGCCGCAGU-CGAC-Cu-------------GGCGCGc -5'
6973 3' -56.8 NC_001875.2 + 21956 0.66 0.847743
Target:  5'- ---cGCGGCG-CGGggaUGGGCgGCGCc -3'
miRNA:   3'- uuuaUGCCGCaGUCg--ACCUGgCGCGc -5'
6973 3' -56.8 NC_001875.2 + 99304 0.66 0.847743
Target:  5'- ---gGCGGCGUUGuaUacGGGCUGCGCa -3'
miRNA:   3'- uuuaUGCCGCAGUcgA--CCUGGCGCGc -5'
6973 3' -56.8 NC_001875.2 + 41336 0.66 0.847743
Target:  5'- -cGUACGcCGUgCAagUGGGCCGCGCGc -3'
miRNA:   3'- uuUAUGCcGCA-GUcgACCUGGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 84388 0.66 0.844503
Target:  5'- ---gGCGGCGUCGGUagccggagcuucgGcGGCgGCGCGu -3'
miRNA:   3'- uuuaUGCCGCAGUCGa------------C-CUGgCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 76653 0.66 0.842871
Target:  5'- ---aAgGGCGUCAGCgGGAUCauggcgguuaaggagGUGCGg -3'
miRNA:   3'- uuuaUgCCGCAGUCGaCCUGG---------------CGCGC- -5'
6973 3' -56.8 NC_001875.2 + 38684 0.66 0.839583
Target:  5'- cAAGUGCGGCGgcguggGGCUGaaccuGACCG-GCGg -3'
miRNA:   3'- -UUUAUGCCGCag----UCGAC-----CUGGCgCGC- -5'
6973 3' -56.8 NC_001875.2 + 48327 0.66 0.839583
Target:  5'- uGAAUugGGCGUCGaacccGCacaaGGACCaGCGUu -3'
miRNA:   3'- -UUUAugCCGCAGU-----CGa---CCUGG-CGCGc -5'
6973 3' -56.8 NC_001875.2 + 40693 0.66 0.839583
Target:  5'- ---cGCGGCG-CAuuUGGaaccGCCGCGCGc -3'
miRNA:   3'- uuuaUGCCGCaGUcgACC----UGGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 28626 0.66 0.839583
Target:  5'- cAAGgcCGGCGUCAGCgugcccgugucgUGGAaCGUGUGg -3'
miRNA:   3'- -UUUauGCCGCAGUCG------------ACCUgGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 110624 0.66 0.837097
Target:  5'- uGGUGCGGUuuaaacacaaccugGUgGcGCUGGccguGCCGCGCGa -3'
miRNA:   3'- uUUAUGCCG--------------CAgU-CGACC----UGGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 87276 0.66 0.832074
Target:  5'- --uUACGGCGcuagucgauucaaugCAGCccGGcacGCCGCGCGa -3'
miRNA:   3'- uuuAUGCCGCa--------------GUCGa-CC---UGGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 110176 0.66 0.83123
Target:  5'- ---gGCGGCGUCGcacugcGCUcGuCCGCGCu -3'
miRNA:   3'- uuuaUGCCGCAGU------CGAcCuGGCGCGc -5'
6973 3' -56.8 NC_001875.2 + 111812 0.66 0.83123
Target:  5'- ---gACGGCGcCuGGCUGcuCCGCGUGa -3'
miRNA:   3'- uuuaUGCCGCaG-UCGACcuGGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 113341 0.66 0.83123
Target:  5'- -cGUGCGGCGggucgggcgCGGCUGcGucgcuGCgGCGCGg -3'
miRNA:   3'- uuUAUGCCGCa--------GUCGAC-C-----UGgCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 84193 0.66 0.83123
Target:  5'- -cGUGCGuuuGCGcaaCAGCUgccgguaguaGGGCCGCGCGc -3'
miRNA:   3'- uuUAUGC---CGCa--GUCGA----------CCUGGCGCGC- -5'
6973 3' -56.8 NC_001875.2 + 43113 0.66 0.822692
Target:  5'- --uUGCGGCa--GGUUGGagccGCCGCGCa -3'
miRNA:   3'- uuuAUGCCGcagUCGACC----UGGCGCGc -5'
6973 3' -56.8 NC_001875.2 + 68560 0.66 0.822692
Target:  5'- ---cGCGGCGgCGGC-GGucgcgcACCGCGUGg -3'
miRNA:   3'- uuuaUGCCGCaGUCGaCC------UGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.